View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_20 (Length: 429)
Name: NF1910_low_20
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_20 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 49708906 - 49708517
Alignment:
| Q |
19 |
ggaatcattcaagatgtcaaaggaagagttaaatgctataaacaagattgggtctgcgcaatctgttccggcgttaggtaatttattcttgttcattttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49708906 |
ggaatcattcaagatgtcaaaggaagagttaaatgctataaacaagattgggtctgcgcaatctgttccggcgttaggtaatttattcttgttcattttc |
49708807 |
T |
|
| Q |
119 |
atattgtatctaggactataatttttgttgtttgttgtgttcatttgcaacatctctgatttatgattgattaataataatgacagcatattggctccaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49708806 |
atattgtatctaggactataatttttgttgtttgttgtgttcatttgcaacatctctgatttatgattgattaataataatgacagcatattggctccaa |
49708707 |
T |
|
| Q |
219 |
ctttctacatattctttgcgtccgctcttccggttattgctttcggagaacaacttagtagggatacagatggaagcttgagcaccgtagaaacattggc |
318 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49708706 |
ctttctacatattttctgcgtccgctcttccggttattgctttcggagaacaacttagtagggatacagatggaagcttgagcactgtagaaacattggc |
49708607 |
T |
|
| Q |
319 |
atctactgccatttgtggaattattcattcaattataggtggccaacctttgttgattttaggagttgcagaaccaactgttataatgta |
408 |
Q |
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| T |
49708606 |
atctactgccatttgtggaattattcattcaattataggtggccaacctttgttgattttaggagttgcagaaccaactgttataatgta |
49708517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 408
Target Start/End: Original strand, 2233028 - 2233153
Alignment:
| Q |
283 |
tacagatggaagcttgagcaccgtagaaacattggcatctactgccatttgtggaattattcattcaattataggtggccaacctttgttgattttagga |
382 |
Q |
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||||| ||||| ||||||||| || ||||||||| |||| || || || ||||||||||| || ||||| | ||||| ||||||||||||||| ||||| |
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| T |
2233028 |
tacaggtggaatcttgagcacagttgaaacattgacatccacagctatatgtggaattatccactcaatatttggtggtcaacctttgttgattgtagga |
2233127 |
T |
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| Q |
383 |
gttgcagaaccaactgttataatgta |
408 |
Q |
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|||| |||||||||||||| ||||| |
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| T |
2233128 |
attgctgaaccaactgttatcatgta |
2233153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 2232032 - 2232101
Alignment:
| Q |
206 |
atattggctccaactttctacatattctttgcgtccgctcttccggttattgctttcggagaacaactta |
275 |
Q |
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| T |
2232032 |
atattggccccaactttctacatattctttgcttctgcacttcctgttattgcttttggagaacaactta |
2232101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 12306277 - 12306377
Alignment:
| Q |
309 |
aaacattggcatctactgccatttgtggaattattcattcaattataggtggccaacctttgttgattttaggagttgcagaaccaactgttataatgta |
408 |
Q |
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||||||| ||||||||||| | ||||||||||| || || ||||| || ||||| ||||||||||| | || || |||||||||||||| || ||||| |
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| T |
12306277 |
aaacattagcatctactgcactgtgtggaattatacactctattattggaggccagcctttgttgatacttggtgtagcagaaccaactgtaatcatgta |
12306376 |
T |
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| Q |
409 |
t |
409 |
Q |
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|
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| T |
12306377 |
t |
12306377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 408
Target Start/End: Original strand, 45077927 - 45078026
Alignment:
| Q |
309 |
aaacattggcatctactgccatttgtggaattattcattcaattataggtggccaacctttgttgattttaggagttgcagaaccaactgttataatgta |
408 |
Q |
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|||| |||||||| ||| | || ||||| ||||| || ||||| || ||||| |||||||| ||||||||||||| |||||||| ||||| || ||||| |
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| T |
45077927 |
aaaccttggcatcaacttcaatatgtggcattatacactcaatcattggtggtcaacctttactgattttaggagtggcagaacctactgtgatcatgta |
45078026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 8557 - 8504
Alignment:
| Q |
286 |
agatggaagcttgagcaccgtagaaacattggcatctactgccatttgtggaat |
339 |
Q |
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|||||||||||| ||||| || |||||| |||| ||||| |||||||||||||| |
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| T |
8557 |
agatggaagcttaagcactgtggaaacactggcttctacagccatttgtggaat |
8504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 8481 - 8428
Alignment:
| Q |
286 |
agatggaagcttgagcaccgtagaaacattggcatctactgccatttgtggaat |
339 |
Q |
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|||||||||||| ||||| || |||||| |||| ||||| |||||||||||||| |
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| T |
8481 |
agatggaagcttaagcactgtggaaacactggcttctacagccatttgtggaat |
8428 |
T |
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