View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_22 (Length: 421)
Name: NF1910_low_22
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 8373695 - 8374092
Alignment:
| Q |
17 |
atgaaagggaatataaatttctataattcaagcacaatatcttaatcttaata---cata------tcacttataattcaaggtacactacatgtcatgg |
107 |
Q |
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| T |
8373695 |
atgaaagggaatataaatttctataattcaagcacaatatcttaatcttaatagtacatactattatcacttataattcaag-----ctacatgtcatgg |
8373789 |
T |
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| Q |
108 |
tagtggagaagtgacaaaaatttacctttgggtaatagtatgcctacttttgagattttttactcgttaaagtaattatttttacctacatacgtcacaa |
207 |
Q |
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| T |
8373790 |
tagtggagaagtgacaaaaatttacccttgggtaatagtatgcctacttttgagattttttactcgttaaagtaattatttttacctacatacgtcacaa |
8373889 |
T |
|
| Q |
208 |
atgtgaaagttttaatctctgaggtttgcat-----tttatgtataagctcgtgcacaactgtatgctatttcg-ttttggctcaagagattataattaa |
301 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8373890 |
atgtaaaagttttaatctctgaggtttgcatagagatttatgtataagctcgtgcacaactgtatgctatttcgtttttggctcaagagattataattaa |
8373989 |
T |
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| Q |
302 |
tctagctagctttacttgtggatgccacgacgaatgaactttgttaaagtatcgaaacgtagatgcaacgattgaggcatgaaagaacaaagcacatgac |
401 |
Q |
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| T |
8373990 |
tctagctagctttaattgtggatgcc---acgaatgaactttgttaaagtattgaaacgtagatgcaacgattgaggcattaaagaacaaagcacatgac |
8374086 |
T |
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