View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_24 (Length: 407)
Name: NF1910_low_24
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_24 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 225155 - 225530
Alignment:
| Q |
13 |
gagacacaagctgaaacaaaattgagcatgagagctacaacattaacggttaattggaactggacaaacttttgtatgttaatgtaaacagaacgtcccc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
225155 |
gagacacaagctgaaacaaaattgagcatgagagctacaacattaacagttaattggaactggacaaacttttgtatgttaatgtaaacagaacggcccc |
225254 |
T |
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| Q |
113 |
atcttgtaacattcacaattgtggtaaagttatcatccattacaatcacatctgcattctcttttgcaacctggacaagataaaggttaacaatgctcaa |
212 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225255 |
atcttgtaacattcacaattgttgtaaagttatcatccattacaatcacatctgcattctcttttgcaacctggacaagataaaggttaacaatgctcaa |
225354 |
T |
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| Q |
213 |
ctaataatgctacgttgaatattaaagaaaatggtactttgaattgaagggtctctcgtgttcgacatgtgtcattgaccataacgacacgacactaaca |
312 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
225355 |
ctaataatgctacgtagaatattaaagaaaatggtactttgaattgaagggtctctcgtgttcgacacgtgtcattgaccataacgacacgacactaaca |
225454 |
T |
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| Q |
313 |
tatataactattttcttaaattaacccatttcgattggtataagggtgttgtcttaaaattttggaggatggtctc |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
225455 |
tatataactattttcttaaattaacccatttcgattggtataagtgtgttgtcttaaaattttggaggatggtctc |
225530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 388
Target Start/End: Complemental strand, 14592223 - 14591848
Alignment:
| Q |
13 |
gagacacaagctgaaacaaaattgagcatgagagctacaacattaacggttaattggaactggacaaacttttgtatgttaatgtaaacagaacgtcccc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14592223 |
gagacacaagctgaaacaaaattgagcatgagagctacaacattaacagttaattggaactggacaaacttttgtatgttaatgtaaacagaacggcccc |
14592124 |
T |
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| Q |
113 |
atcttgtaacattcacaattgtggtaaagttatcatccattacaatcacatctgcattctcttttgcaacctggacaagataaaggttaacaatgctcaa |
212 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14592123 |
atcttgtaacattcacaattgttgtaaagttatcatccattacaatcacatctgcattctcttttgcaacctggacaagataaaggttaacaatgctcaa |
14592024 |
T |
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| Q |
213 |
ctaataatgctacgttgaatattaaagaaaatggtactttgaattgaagggtctctcgtgttcgacatgtgtcattgaccataacgacacgacactaaca |
312 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14592023 |
ctaataatgctacgtagaatattaaagaaaatggtactttgaattgaagggtctctcgtgttcgacacgtgtcattgaccataacgacacgacactaaca |
14591924 |
T |
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| Q |
313 |
tatataactattttcttaaattaacccatttcgattggtataagggtgttgtcttaaaattttggaggatggtctc |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14591923 |
tatataactattttcttaaattaacccatttcgattggtataagtgtgttgtcttaaaattttggaggatggtctc |
14591848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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