View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1910_low_3 (Length: 823)
Name: NF1910_low_3
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_3 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 210 - 452
Target Start/End: Original strand, 10974510 - 10974751
Alignment:
| Q |
210 |
atacaaaagatagaaattgcagaaacagcggcaatggtggacggcggtgatgataagcggacgaatatataaaaagatcttaaaaagaatatatttgttt |
309 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10974510 |
atacagaagatagaaattgtagaaacagcggcaatggtggacggcggtgataataagcggacgaatataaaaaaagatcttaaaaagaatatatttgttt |
10974609 |
T |
|
| Q |
310 |
tataaggataattatgtcatttaaatatgatatatttcttatcctatcaattacaagggtgcaccaaacac--aaattctatcacatttcttatcatgtg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
10974610 |
tataaggataattatgtcatttaaatatgatatatttcttatcctatcaattacaagggtgcaccaaacacataaattctatcacatttcttatcatat- |
10974708 |
T |
|
| Q |
408 |
tacaccaaacacctgatagaataaaagtgtatcatgtcactatcg |
452 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10974709 |
--caccaaacacctgatacaataaaagtgtatcatgtcactatcg |
10974751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 585 - 810
Target Start/End: Complemental strand, 4843279 - 4843053
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
4843279 |
tgtggggtccagccattgccacatggccaacatacatttggcaagatggaaggttgcatgtgatgagaagtagcaaggtgcattgtgtacacatggtgta |
4843180 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaatgacaaat |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| | |
|
|
| T |
4843179 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttggtgtggtgcatgcatagcaagggacacttggtgttttgcatgaaaggcaaatgacaagt |
4843080 |
T |
|
| Q |
784 |
gtcttcatgtatgtaaggcaactttga |
810 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
4843079 |
gtcttcatgcatgtaaggcaactttga |
4843053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 585 - 809
Target Start/End: Complemental strand, 25857763 - 25857533
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25857763 |
tgtggggtccagccattgccacatgtccaacatacatttgacaaaatggaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
25857664 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatg--agagacacttgatgtg----gtgcatgcattgcaagggacactgggtgtttgcatgaaaggcaaatga |
778 |
Q |
| |
|
|||||||||| ||| || ||| |||||| || |||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25857663 |
gtgtatgagtgacatgtgttgtggtgcatgcaagggacatttggtgtggtgcgtgcatgcattgcaagggacacttggtgtttgcatgaaaggcaaatga |
25857564 |
T |
|
| Q |
779 |
caaatgtcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
25857563 |
caaatgtcttcatgcatgtaaggcaactttg |
25857533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 585 - 725
Target Start/End: Complemental strand, 4836174 - 4836034
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4836174 |
tgtggggtccagccattgccacatggccaacatacatttgacaagatggaaggttgcatgtgatgacaagtagcaaggtgcatggtgtacacatggtgta |
4836075 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttg |
725 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836074 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttg |
4836034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 585 - 809
Target Start/End: Complemental strand, 24379894 - 24379675
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24379894 |
tgtggggtccagccattgccacatggccaacatacatttgacaaaatggaaggttgcatctgataacaagcagcaagatgcatggtgtacacatggtgta |
24379795 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatg--agagacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaatgacaa |
781 |
Q |
| |
|
|||||||||| ||| ||| ||| |||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||| ||| |
|
|
| T |
24379794 |
gtgtatgagtgacatatgttgtggtgcatgcaagagacactttgtgtggtgcatgcattgcaagggacacttggtgttttgcat-aaagg-------caa |
24379703 |
T |
|
| Q |
782 |
atgtcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
24379702 |
atgtcttcatgcatgtaaggcaactttg |
24379675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 454 - 584
Target Start/End: Original strand, 10974801 - 10974931
Alignment:
| Q |
454 |
gatcttagaagactatttcaattctgattgagcatttggaagttgtgtacttgaacattggcagtctcttggttgtatccttgagcaaattctaatcagt |
553 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
10974801 |
gatcttagaagactatttcaattgtgattgagcatttggaagttgtgtacttgaacattggaagtctcttggttatgtccttgagcaaattgtaatcagt |
10974900 |
T |
|
| Q |
554 |
tgtgattatagtgaaaatcaattggaagtgc |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10974901 |
tgtgattatagtgaaaatcaattggaagtgc |
10974931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 585 - 808
Target Start/End: Original strand, 17845440 - 17845667
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||| |||||| || || |||||||||||||| |||||||| ||| ||||||||||||||||||| | |
|
|
| T |
17845440 |
tgtggggttcagccattgtcacatcgccaacatatatttgataaaatagaaggttgcatgtgaagacaagtaataaggtgcatggtgtacacatggtatg |
17845539 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcat---gagagacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaatgaca |
780 |
Q |
| |
|
|||||||||||||||||| |||| ||| | ||||||| || ||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |
|
|
| T |
17845540 |
gtgtatgagtaacacatgttgtagtgctttgcaagagacatgtggtgtggtgcatgcattgcaagggacatttggtgttttgcatgaaaggcaaatgaca |
17845639 |
T |
|
| Q |
781 |
aatgtcttcatgtatgtaaggcaacttt |
808 |
Q |
| |
|
| ||||||||||||||||||||| |||| |
|
|
| T |
17845640 |
agtgtcttcatgtatgtaaggcatcttt |
17845667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 585 - 810
Target Start/End: Complemental strand, 27341565 - 27341333
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| | | || |||||| | |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27341565 |
tgtggggtctagccattgccacatggccaatatgcatttgacaaaagggaaagttgcacgagatgacaagtagcaaggggcatggtgtacacatggtgta |
27341466 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatg-------agagacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaat |
776 |
Q |
| |
|
|| ||||||| || |||| ||| |||||| |||||||| || ||||||||||||||| |||||| |||| |||| ||||| ||||||| |||| |
|
|
| T |
27341465 |
gtatatgagttac-catgttgtggtgcatgcattgcaagagacacatggtgtggtgcatgcattacaaggggcacttggtgttttgcttgaaaggaaaat |
27341367 |
T |
|
| Q |
777 |
gacaaatgtcttcatgtatgtaaggcaactttga |
810 |
Q |
| |
|
| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
27341366 |
ggcaagtgtcttcatgcatgtaaggcaactttga |
27341333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 614 - 809
Target Start/End: Original strand, 4603262 - 4603472
Alignment:
| Q |
614 |
acatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgta------------cacatggtgtagtgtatgagtaacacat |
701 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
4603262 |
acatacatttgacaaaatggaaggttgcatgtgatgacaagtagcaagatgcatggtgtagtgtatcagtaacacatggtgtagtgtatgagtgacacat |
4603361 |
T |
|
| Q |
702 |
ggtgtaatgcatg--agagacacttgatgtggtgcatgcattgcaagggacactgggtgtt-tgcatgaaaggcaaatgacaaatgtcttcatgtatgta |
798 |
Q |
| |
|
| | |||||| || |||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
4603362 |
gtgttggtgcatgcaagggacacttggtgttgtgcatgcattgcaagggacacttggtgttgtgcatgaaaggcaaatgacaaatgtcttcgtgcatgta |
4603461 |
T |
|
| Q |
799 |
aggcaactttg |
809 |
Q |
| |
|
||| ||||||| |
|
|
| T |
4603462 |
aggaaactttg |
4603472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 10974139 - 10974243
Alignment:
| Q |
37 |
atatatcatgactaattgtcctttctccttcatcttttacttaaatattgtgaaagcaacctgattcatacacatgtgattctctaacaatggaacaata |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10974139 |
atatatcatgactaattgtcctttctccttcatcttttatttaaatattgtgaaagaaaactgattcataaacatgtgattctctaacaatggaacaatc |
10974238 |
T |
|
| Q |
137 |
aattt |
141 |
Q |
| |
|
||||| |
|
|
| T |
10974239 |
aattt |
10974243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 598 - 809
Target Start/End: Complemental strand, 13466246 - 13466030
Alignment:
| Q |
598 |
cattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgtagtgtatgagtaac |
697 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||| || ||||||||||||||| || |||| || || |||||||||| |||||||| |||||||||||| |
|
|
| T |
13466246 |
cattgtcacatggacaacatatatttgacaaaatagaaggttgcatgtgataactagta---aggtgtatggtgtacatatggtgtaatgtatgagtaac |
13466150 |
T |
|
| Q |
698 |
acatggtgtaatgcatg-------agagacacttgatgtggtgcatgcattgcaagggacactgggtgttt-gcatgaaaggcaaatgacaaatgtcttc |
789 |
Q |
| |
|
||||| ||| || | | || ||||| || ||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
13466149 |
acatgttgtggtgtacgcattgcaagtgacacatggtgtggtgcatgcattgcaagggacactaagtgttttgcatgaaagacaaatgacaagtgtcttc |
13466050 |
T |
|
| Q |
790 |
atgtatgtaaggcaactttg |
809 |
Q |
| |
|
||| ||||||| ||||||| |
|
|
| T |
13466049 |
atgcatgtaagataactttg |
13466030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 28109139 - 28109247
Alignment:
| Q |
273 |
aatatataaaaagatcttaaaa-aga-atatatttgttttataaggataattatgtcatttaaatatgatatatttcttatcctatcaattacaagggtg |
370 |
Q |
| |
|
|||||| ||||||||||||||| | | |||||||||||||| || ||||||| |||||||||||||| |||||||||||||| ||||||| |||| ||| |
|
|
| T |
28109139 |
aatataaaaaaagatcttaaaacatatatatatttgttttacaaagataattttgtcatttaaatataatatatttcttatcatatcaatagcaagtgtg |
28109238 |
T |
|
| Q |
371 |
caccaaaca |
379 |
Q |
| |
|
||||||||| |
|
|
| T |
28109239 |
caccaaaca |
28109247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 603 - 702
Target Start/End: Complemental strand, 38994705 - 38994605
Alignment:
| Q |
603 |
ccacatggccaacatacatttgacaaga-tgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgtagtgtatgagtaacacat |
701 |
Q |
| |
|
||||||| | |||||||||||||||| | || || ||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
38994705 |
ccacatgacgaacatacatttgacaaaaatggaatgttgcatgtgatgacaagtagcaaggtgcatgaagtacacatgaagtagtgtatgagtaacacat |
38994606 |
T |
|
| Q |
702 |
g |
702 |
Q |
| |
|
| |
|
|
| T |
38994605 |
g |
38994605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 663 - 809
Target Start/End: Complemental strand, 38994598 - 38994444
Alignment:
| Q |
663 |
tgcatggtgtacacatggtgtagtgtatgagtaacacatggtgtaatgcatg-------agagacacttgatgtggtgcatgcattgcaagggacactgg |
755 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| ||| ||||| | |||||| || |||||||||||||||||| |||||||| | |
|
|
| T |
38994598 |
tgcatagtgtacacatgatgtagtgtatgagtaacacatgttgtggtgcatatattacaaaagacacatggtgtggtgcatgcattgcatgggacacttg |
38994499 |
T |
|
| Q |
756 |
gtgttt-gcatgaaaggcaaatgacaaatgtcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
||||| |||||||| ||||||||||| | |||||||| | ||||| |||||||| |
|
|
| T |
38994498 |
atgttttgcatgaaatgcaaatgacaagtttcttcatgcacgtaagacaactttg |
38994444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 759 - 809
Target Start/End: Complemental strand, 4836029 - 4835979
Alignment:
| Q |
759 |
tttgcatgaaaggcaaatgacaaatgtcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
4836029 |
tttgcatgaaaggcaaatgacaagtgtcttcatgcatgtaaggcaactttg |
4835979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 496 - 565
Target Start/End: Original strand, 10647217 - 10647286
Alignment:
| Q |
496 |
ttgtgtacttgaacattggcagtctcttggttgtatccttgagcaaattctaatcagttgtgattatagt |
565 |
Q |
| |
|
|||||| |||||||||||| | |||||| ||||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
10647217 |
ttgtgtgcttgaacattggaattctcttcgttgtattcttgagcaatttgaaatcagttgtgattatagt |
10647286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 584
Target Start/End: Complemental strand, 1782632 - 1782544
Alignment:
| Q |
496 |
ttgtgtacttgaacattggcagtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtgaaaatcaattggaagtgc |
584 |
Q |
| |
|
|||||||||| | ||||| ||||| |||||||| |||||||||| || |||| |||||||||||||||||| ||| |||||||||| |
|
|
| T |
1782632 |
ttgtgtacttcagcattgcaagtctattggttgtgtccttgagcattttgtaattagttgtgattatagtgaatatctcttggaagtgc |
1782544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 10974281 - 10974323
Alignment:
| Q |
175 |
tgaacaccgtattgaagaataacggaaaaagcagtatacaaaag |
218 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
10974281 |
tgaacaccgtattgaagagtaacgg-aaaagcagtatacaaaag |
10974323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 416
Target Start/End: Original strand, 28109264 - 28109298
Alignment:
| Q |
382 |
aattctatcacatttcttatcatgtgtacaccaaa |
416 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28109264 |
aattctatcacatttcttatcatgtatacaccaaa |
28109298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 585 - 809
Target Start/End: Original strand, 2307 - 2532
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2307 |
tgtggggtccagccattgccacatgtccaacatacatttgacaagatggaaggtttcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
2406 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttgatgtggtgcatgcattgcaagggacactgggtgt-ttgcatgaaaggcaaatgacaaat |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |
|
|
| T |
2407 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttggtgtggtgcatgcattgcaagggacacttggtgtcttgcatgaaaggcaaatgacaagt |
2506 |
T |
|
| Q |
784 |
gtcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
2507 |
gtcttcatgcatgtaaggcaactttg |
2532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 585 - 809
Target Start/End: Original strand, 36167187 - 36167411
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36167187 |
tgtggggtccagccattgccacatgtccaacatacatttgacaagatggaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
36167286 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttgatgtggtgcatgcattgcaagggacactgggtgtttgcatgaaaggcaaatgacaaatg |
784 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
36167287 |
gtgtatgagtaacacatgttgtaatgcatgagagacacttggtgtggtgcatgcaatgcaagggacacttggtgtttgcatgaaaggaaaataacaaatg |
36167386 |
T |
|
| Q |
785 |
tcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
36167387 |
tcttcatgcatgtaaggcaactttg |
36167411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 585 - 809
Target Start/End: Original strand, 41481188 - 41481412
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41481188 |
tgtggggtccagccattgctacatgtccaacatacatttgacaagatggaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
41481287 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttgatgtggtgcatgcattgcaagggacactgggtgtttgcatgaaaggcaaatgacaaatg |
784 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
41481288 |
gtgtatgagtaacacatgttgtaatgcatgagagacacttggtgtggtgcatgcattgcaatggacacttggtgtttgcatgaaaggtaaattacaaatg |
41481387 |
T |
|
| Q |
785 |
tcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
41481388 |
tcttcatgcatgtaaggcaactttg |
41481412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 589 - 809
Target Start/End: Complemental strand, 18951748 - 18951525
Alignment:
| Q |
589 |
gggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgtagtgt |
688 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18951748 |
gggtccagccattgccacatgaccaacatacatttgacaaaatggaaggttgcatgtgatgaaaagtagcaagatgcatggtgtacacatggtgtagtgt |
18951649 |
T |
|
| Q |
689 |
atgagtaacacatggtgtaatgcatg--agagacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaatgacaaatgt |
785 |
Q |
| |
|
|||||| ||||||| ||| |||||| || |||||||| ||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||| ||| |
|
|
| T |
18951648 |
atgagtgacacatgttgtggtgcatgtaagggacacttggtgtggtgcatgcattgcaagggacaattggtgatttgcatgaaaggaaaatgacaagtgt |
18951549 |
T |
|
| Q |
786 |
cttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
||||| |||||||||| ||||| |
|
|
| T |
18951548 |
tctcatgcatgtaaggcagctttg |
18951525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 589 - 809
Target Start/End: Original strand, 18965826 - 18966049
Alignment:
| Q |
589 |
gggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgtagtgt |
688 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||||||| ||| || || | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18965826 |
gggtccagccattgtcacatggccaacatgtatttgacaaaatggaacgtagtatgtgatgacaagtagcaagatgcatggtgtacacatggtgtagtgt |
18965925 |
T |
|
| Q |
689 |
atgagtaacacatggtgtaatgcatg--agagacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaatgacaaatgt |
785 |
Q |
| |
|
|||||| ||||||| | | |||||| || |||||||| ||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||||| |
|
|
| T |
18965926 |
atgagtgacacatgttttggtgcatgcaagggacacttggtgtggtgcatgcattgcaagggacagttggtgatttgcatgaaaggaaaatgacaaatgt |
18966025 |
T |
|
| Q |
786 |
cttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
||||||| |||||||||| ||||| |
|
|
| T |
18966026 |
cttcatgcatgtaaggcagctttg |
18966049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 25393932 - 25394000
Alignment:
| Q |
516 |
agtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtg-aaaatcaattggaagtgc |
584 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| ||||||||||||||||| || ||||||| |||||||||| |
|
|
| T |
25393932 |
agtctcttggttgtgtccttgagcaatttc-aatcagttgtgattataatgtaaaatcatttggaagtgc |
25394000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 25727990 - 25728058
Alignment:
| Q |
516 |
agtctcttggttgtatccttgagcaaattctaatcagttgtgattatagt-gaaaatcaattggaagtgc |
584 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| ||||||||||||||||| | |||||||| |||||||||| |
|
|
| T |
25727990 |
agtctcttggttgtgtccttgagcaatttc-aatcagttgtgattataatggaaaatcatttggaagtgc |
25728058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 571
Target Start/End: Original strand, 18564450 - 18564524
Alignment:
| Q |
496 |
ttgtgtacttgaacattggcagtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtgaaaat |
571 |
Q |
| |
|
|||||| ||||| |||||| ||| | |||||||| |||||||| ||||| |||| |||| |||||||||||||||| |
|
|
| T |
18564450 |
ttgtgtgcttgagcattggaagttttttggttgtgtccttgag-aaattgtaataagttatgattatagtgaaaat |
18564524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 569
Target Start/End: Original strand, 211442 - 211495
Alignment:
| Q |
516 |
agtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtgaaa |
569 |
Q |
| |
|
|||||||||| || ||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
211442 |
agtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaa |
211495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 569
Target Start/End: Complemental strand, 240814 - 240761
Alignment:
| Q |
516 |
agtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtgaaa |
569 |
Q |
| |
|
|||||||||| || ||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
240814 |
agtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaa |
240761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 569
Target Start/End: Original strand, 725065 - 725118
Alignment:
| Q |
516 |
agtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtgaaa |
569 |
Q |
| |
|
|||||||||| || ||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
725065 |
agtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaa |
725118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 569
Target Start/End: Complemental strand, 794169 - 794116
Alignment:
| Q |
516 |
agtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtgaaa |
569 |
Q |
| |
|
|||||||||| || ||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
794169 |
agtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaa |
794116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 6e-98; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 585 - 809
Target Start/End: Complemental strand, 54967840 - 54967615
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
54967840 |
tgtggggtccagccattgccacatgtccaacatacatttgacaagatggaaggttgcatgtgatgataagtagcaggatgcatggtgtacacatggtgta |
54967741 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaatgacaaat |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | |
|
|
| T |
54967740 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttggtgtggtgcatgcattgcaagggacacttggtgttttgcatgaaaggcaaatgacaagt |
54967641 |
T |
|
| Q |
784 |
gtcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
54967640 |
gtcttcatgcatgtaaggcaactttg |
54967615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 585 - 809
Target Start/End: Complemental strand, 54980472 - 54980247
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| |||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54980472 |
tgtggggtccagccattgccgcatgtccaacatacatttgacaagatggaaggttgcatgtgatgacaagtagcaggatgcatggtgtacacatggtgta |
54980373 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaatgacaaat |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | |
|
|
| T |
54980372 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttggtgtggtgcatgcattgcaagggacacttggtgttttgcatgaaaggcaaatgacaagt |
54980273 |
T |
|
| Q |
784 |
gtcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
54980272 |
gtcttcatgcatgtaaggcaactttg |
54980247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 585 - 809
Target Start/End: Complemental strand, 44783152 - 44782927
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44783152 |
tgtggggtccagccattgccacatgttcaacatacatttgacaagatggaaggttgcatgtggtgacaagtagcaagatgcatggtgtacacatggtgta |
44783053 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatgagagacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaatgacaaat |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
44783052 |
gtgtatgagtaacacatggtgtaatgcatgagagacatttggtgtggtgcatgcattgcaagggacacttggtgttttgcataaaaggcaaatgacaaat |
44782953 |
T |
|
| Q |
784 |
gtcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
44782952 |
gtcttcatgcatgtaaggcaactttg |
44782927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 585 - 799
Target Start/End: Original strand, 39298364 - 39298586
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| ||| | | |||||||||||||||| |||||||| ||| ||| ||||||||||||| ||||| ||| |||||||||||||||| ||||| |
|
|
| T |
39298364 |
tgtggggtccagcaactcccacatggccaacataggtttgacaaaatggaagattgcatgtgatgataagtattaaggtgcatggtgtacacatagtgta |
39298463 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatg-------agagacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaat |
776 |
Q |
| |
|
||||| |||||||| ||| ||| ||||||| |||||||| || |||| |||||| |||||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
39298464 |
gtgtacgagtaacatatgttgtgatgcatgcattgcaagagacacatggtgtgatgcatgttttgcaagggacacttggtgttttgcatgaaaagcaaat |
39298563 |
T |
|
| Q |
777 |
gacaaatgtcttcatgtatgtaa |
799 |
Q |
| |
|
||||| |||||||||| |||||| |
|
|
| T |
39298564 |
gacaagtgtcttcatgcatgtaa |
39298586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 585 - 804
Target Start/End: Original strand, 17645366 - 17645593
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| | | |||||||| |||||||| | ||||||||| | ||||||||||||||| |||||||||| | || |||||||| | | ||||| |
|
|
| T |
17645366 |
tgtggggtccatcgattgccacgtggccaacttgtatttgacaaactcgaaggttgcatgtgatcacaagtagcagggtgtatggtgtatagtttgtgta |
17645465 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatg-------agagacacttgatgtggtgcatgcattgcaagggacactgggtgttt-gcatgaaaggcaaat |
776 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| |||||||| || || ||||||| ||||| |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
17645466 |
gtgtatgagtaacatatgttgtggtgcatgcattgcaagagacacatggtgcggtgcattcattggaagggacacttggtgttttgcatgaaaggcaaat |
17645565 |
T |
|
| Q |
777 |
gacaaatgtcttcatgtatgtaaggcaa |
804 |
Q |
| |
|
||||| ||| |||||| ||||||||||| |
|
|
| T |
17645566 |
gacaagtgtgttcatgcatgtaaggcaa |
17645593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 48935813 - 48935756
Alignment:
| Q |
394 |
tttcttatcatgtgtacaccaaacacctgatagaataaaagtgtatcatgtcactatc |
451 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| || ||||||||||||||| |
|
|
| T |
48935813 |
tttcttatcatgtgtacaccaaacacatgataggataagtgtctatcatgtcactatc |
48935756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 14280475 - 14280407
Alignment:
| Q |
516 |
agtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtgaaaatcaattggaagtgc |
584 |
Q |
| |
|
||||| |||||||| || |||| ||| || ||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
14280475 |
agtcttttggttgtgtctttgaacaatttgtaatcagttgtgattatagtgaaaatccattgaaagtgc |
14280407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 139; Significance: 3e-72; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 585 - 809
Target Start/End: Complemental strand, 342850 - 342620
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
342850 |
tgtggggtccagccattgccacatgtccaacatacatttgacaaaatggaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
342751 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatg--agagacacttgatgtg----gtgcatgcattgcaagggacactgggtgtttgcatgaaaggcaaatga |
778 |
Q |
| |
|
|||||||||| ||| || ||| |||||| || |||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
342750 |
gtgtatgagtgacatttgttgtggtgcatgcaagggacatttggtgtggtgcgtgcatgcattgcaagggacacttggtgtttgcatgaaaggcaaatga |
342651 |
T |
|
| Q |
779 |
caaatgtcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| |
|
|
| T |
342650 |
caaatgtcttcatgcatgtaagtcaactttg |
342620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 83; Significance: 7e-39; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 585 - 809
Target Start/End: Complemental strand, 27038 - 26806
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
||||||||| | | |||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||||||| || ||||| |
|
|
| T |
27038 |
tgtggggtccaactattgccacgccgccaacatacatttgacaaaatgaaaggttgcatgtgatgacaagtagcaaggtgtatggtgtacaaatagtgta |
26939 |
T |
|
| Q |
685 |
gtgtatgagtaacacatggtgtaatgcatg-------agagacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaat |
776 |
Q |
| |
|
||||||||||||||| || | | ||||||| ||||| || || ||||||||||| |||||| |||||| |||| ||||||||||||| |||| |
|
|
| T |
26938 |
gtgtatgagtaacacgtgttatgatgcatgtattgcaagagatacatggtgtggtgcatgtgttgcaactgacacttggtgttttgcatgaaaggaaaat |
26839 |
T |
|
| Q |
777 |
gacaaatgtcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||| |
|
|
| T |
26838 |
aacaagtgtcttcatgcatgtgaggcaactttg |
26806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 586 - 673
Target Start/End: Original strand, 22764036 - 22764123
Alignment:
| Q |
586 |
gtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgta |
673 |
Q |
| |
|
|||||||| | ||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22764036 |
gtggggtccaaccattgccacatgtccaacatacatttgacaaaatggaaggttgcatgtgatgacaagtagcaagatgcatggtgta |
22764123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 643 - 808
Target Start/End: Original strand, 16698118 - 16698290
Alignment:
| Q |
643 |
tgtgatgacaagtagcaagatgcatggtgtacacatggtgtagtgtatgagtaacacatggtgtaatgcatg-------agagacacttgatgtggtgca |
735 |
Q |
| |
|
|||||||||| |||||||| |||||| |||||| |||||||||||||||| ||||||| ||| |||||| |||||||| || ||||||||| |
|
|
| T |
16698118 |
tgtgatgaca-gtagcaaggtgcatgatgtacatatggtgtagtgtatgacagacacatgttgtggtgcatgcattgcaagagacacatggtgtggtgca |
16698216 |
T |
|
| Q |
736 |
tgcattgcaagggacactgggtg-tttgcatgaaaggcaaatgacaaatgtcttcatgtatgtaaggcaacttt |
808 |
Q |
| |
|
|||||||||||||||||| | || |||||| |||| |||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
16698217 |
tgcattgcaagggacacttgatgttttgcacgaaaaccaaatgacaagtgtcttcatgcatgtaaggcaacttt |
16698290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 616 - 702
Target Start/End: Original strand, 37037555 - 37037641
Alignment:
| Q |
616 |
atacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgtagtgtatgagtaacacatg |
702 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37037555 |
atacatttgacaaaatgaaaggttgcatgtgatgacaagtagtaaggtgcatggtgtacacatggtgtagtgtatgagcaacacatg |
37037641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 696 - 809
Target Start/End: Original strand, 37037612 - 37037726
Alignment:
| Q |
696 |
acacatggtgtaatgcatgagagacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaatgacaaatgtcttcatgta |
794 |
Q |
| |
|
|||||||||||| || ||||| |||| || |||||||||||||||| |||||||||| |||| |||||||||||| |||||||||| ||| |||||| | |
|
|
| T |
37037612 |
acacatggtgtagtgtatgagcaacacatgttgtggtgcatgcattggaagggacacttggtgttttgcatgaaagacaaatgacaagtgttttcatgca |
37037711 |
T |
|
| Q |
795 |
tgtaaggcaactttg |
809 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
37037712 |
tgtaagacaactttg |
37037726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 584
Target Start/End: Original strand, 16934067 - 16934154
Alignment:
| Q |
496 |
ttgtgtacttgaacattggcagtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtgaaaatcaattggaagtgc |
584 |
Q |
| |
|
|||||| ||||| ||| || |||||||||||||| ||||||||| | || |||||| | ||||||||||||||||||| || ||||||| |
|
|
| T |
16934067 |
ttgtgtgcttgagcataggaagtctcttggttgtgtccttgagc-atttgtaatcattagtgattatagtgaaaatcactttgaagtgc |
16934154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 570
Target Start/End: Complemental strand, 19593988 - 19593922
Alignment:
| Q |
503 |
cttgaacattggcagtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtgaaaa |
570 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
19593988 |
cttgaacatagaaagtctcttggttgtttccttgagcat-tggtaatcagttgtgattatagtgaaaa |
19593922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 722 - 809
Target Start/End: Complemental strand, 9757695 - 9757607
Alignment:
| Q |
722 |
cttgatgtggtgcatgcattgcaagggacactgggtgttt-gcatgaaaggcaaatgacaaatgtcttcatgtatgtaaggcaactttg |
809 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
9757695 |
cttggtgtggtgcatgcattgcaagggacacttggtgttttgcatgaaaggcaaatgacaaatgtcttcatgcatgtgaggcaactttg |
9757607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 588 - 702
Target Start/End: Complemental strand, 37287487 - 37287373
Alignment:
| Q |
588 |
ggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgtagtg |
687 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||| || || ||||||||||||||||| | | | ||| ||||| ||||||||||||||||||| |
|
|
| T |
37287487 |
ggggtccagccattgccacatagccaacatacatttgataaaatagaaggttgcatgtgatgagatatggtaaggtgcatagtgtacacatggtgtagtg |
37287388 |
T |
|
| Q |
688 |
tatgagtaacacatg |
702 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37287387 |
tatgagtaacacatg |
37287373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 612 - 702
Target Start/End: Original strand, 3346345 - 3346435
Alignment:
| Q |
612 |
caacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgtagtgtatgagtaacacatg |
702 |
Q |
| |
|
||||||||||||||||| ||| |||||||| ||||||||||| ||||||| |||||| |||||| |||||||||||||||||| ||||||| |
|
|
| T |
3346345 |
caacatacatttgacaaaatggaaggttgcttgtgatgacaaatagcaaggtgcatgatgtacatatggtgtagtgtatgagtgacacatg |
3346435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 696 - 809
Target Start/End: Complemental strand, 37287402 - 37287288
Alignment:
| Q |
696 |
acacatggtgtaatgcatgagagacacttgatgtggtgcatgcattgcaagggacactgggtgttt-gcatgaaaggcaaatgacaaatgtcttcatgta |
794 |
Q |
| |
|
|||||||||||| || ||||| |||| || ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||| | |
|
|
| T |
37287402 |
acacatggtgtagtgtatgagtaacacatgttgtggtgcatgcatttcaagggacacttagtgttttgcatgaaaggcaaatgacaagtgtcttcatgca |
37287303 |
T |
|
| Q |
795 |
tgtaaggcaactttg |
809 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
37287302 |
tgtaagacaactttg |
37287288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 585 - 701
Target Start/End: Complemental strand, 38394198 - 38394082
Alignment:
| Q |
585 |
tgtggggtctagccattgccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgta |
684 |
Q |
| |
|
|||||||||||| ||||| ||| ||| |||||||||||||| || || || |||||||||||||||||||||||| |||| | ||||||||| |||| |
|
|
| T |
38394198 |
tgtggggtctagtcattgtcacgtggtcaacatacatttgataaaatagaatgttgcatgtgatgacaagtagcaacgtgcacgatgtacacatagtgtg |
38394099 |
T |
|
| Q |
685 |
gtgtatgagtaacacat |
701 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38394098 |
gtgtatgagtaacacat |
38394082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 625 - 810
Target Start/End: Complemental strand, 42683427 - 42683235
Alignment:
| Q |
625 |
acaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgtagtgtatgagtaacacatggtgtaatgcat-------gaga |
717 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||| |||| ||||||||||||||||| |||||| ||||||||||||||| | ||||| ||| |
|
|
| T |
42683427 |
acaaaatgaaaggttgtatgtgatgacaagtaacaaggtgcatggtgtacacatgatgtagtatatgagtaacacatgtcatggtgcatacattacaaga |
42683328 |
T |
|
| Q |
718 |
gacacttgatgtggtgcatgcattgcaagggacactgggtg-tttgcatgaaaggcaaatgacaaatgtcttcatgtatgtaaggcaactttga |
810 |
Q |
| |
|
||| | || |||| |||||||||||||| ||||||| ||| |||| ||||||| |||||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
42683327 |
gacgcgtggtgtgttgcatgcattgcaa-ggacacttcgtgttttgtatgaaagacaaatgacaagtgtcttcatgcatgtaagacaactttga |
42683235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 6e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 585 - 702
Target Start/End: Original strand, 27641314 - 27641432
Alignment:
| Q |
585 |
tgtggggtctagccattg-ccacatggccaacatacatttgacaagatgtaaggttgcatgtgatgacaagtagcaagatgcatggtgtacacatggtgt |
683 |
Q |
| |
|
||||||||| || ||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| | || || |||| |
|
|
| T |
27641314 |
tgtggggtccagtcattggccacttggccaacatacatttgacaacatggaaggttgcatgtgatgacaagtagcaatgtgcatggtatgcagatagtgt |
27641413 |
T |
|
| Q |
684 |
agtgtatgagtaacacatg |
702 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27641414 |
tgtgtatgagtaacacatg |
27641432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 503 - 584
Target Start/End: Complemental strand, 23190845 - 23190765
Alignment:
| Q |
503 |
cttgaacattggcagtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtgaaaatcaattggaagtgc |
584 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||| || || |||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
23190845 |
cttgagcattggaagtctcttggttgtgtccttgagtaa-ttgtaattagttgtgattatagtgaaaatctcttggaagtgc |
23190765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 451
Target Start/End: Complemental strand, 42471374 - 42471309
Alignment:
| Q |
386 |
ctatcacatttcttatcatgtgtacaccaaacacctgatagaataaaagtgtatcatgtcactatc |
451 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| ||||| ||||| || |||||| ||| |||| |
|
|
| T |
42471374 |
ctatcatatttcttatcatgtgtgcaccaaacacatgatatgataaatgtctatcatatcattatc |
42471309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 496 - 584
Target Start/End: Complemental strand, 16209 - 16122
Alignment:
| Q |
496 |
ttgtgtacttgaacattggcagtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtgaaaatcaattggaagtgc |
584 |
Q |
| |
|
|||||| ||||| ||| || |||||||||||||| ||||||||| | || |||||| | ||||||||||||||||||| || ||||||| |
|
|
| T |
16209 |
ttgtgtgcttgagcataggaagtctcttggttgtgtccttgagc-atttgtaatcattagtgattatagtgaaaatcactttgaagtgc |
16122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 21737173 - 21737106
Alignment:
| Q |
516 |
agtctcttggttgtatccttgagcaaattctaatcagttgtgattatagtgaaaatcaattggaagtgc |
584 |
Q |
| |
|
|||||||||| | | |||||||||| || ||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21737173 |
agtctcttggatatctccttgagcat-ttgtaaacagttgtgattatagtgaaaatccattggaagtgc |
21737106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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