View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1910_low_30 (Length: 368)

Name: NF1910_low_30
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1910_low_30
NF1910_low_30
[»] chr3 (4 HSPs)
chr3 (131-350)||(39712017-39712236)
chr3 (135-320)||(11527669-11527854)
chr3 (4-89)||(39712278-39712363)
chr3 (1-73)||(11527907-11527979)
[»] chr2 (7 HSPs)
chr2 (135-320)||(37953012-37953197)
chr2 (3-85)||(44905040-44905122)
chr2 (3-85)||(28166196-28166278)
chr2 (25-89)||(37952911-37952975)
chr2 (148-196)||(37896385-37896433)
chr2 (20-80)||(37958644-37958704)
chr2 (148-199)||(37958769-37958820)
[»] chr1 (2 HSPs)
chr1 (3-85)||(40768147-40768229)
chr1 (3-85)||(13228709-13228791)
[»] chr7 (1 HSPs)
chr7 (3-85)||(38757177-38757259)
[»] chr4 (2 HSPs)
chr4 (3-85)||(34538660-34538742)
chr4 (4-73)||(11149455-11149524)
[»] chr5 (1 HSPs)
chr5 (10-85)||(6535356-6535431)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 131 - 350
Target Start/End: Complemental strand, 39712236 - 39712017
Alignment:
Q  131 gtacttttgtttcacatgtgattgcagagatagacttgggtactcaataccagaggggtattttgggaactgtgtagtgtctaaaagtgcaaccatgaag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712236 gtacttttgtttcacatgtgattgcagagatagacttgggtactcaataccagaggggtattttgggaactgtgtagtgtctaaaagtgcaaccatgaag 39712137  T
Q  231 agaaaggatatgaagggaataaatagttttgttgatgttgttaaggtaattgaaaaggctgttaatgagataaaaaatgaacctcttaaaaaattagaag 330  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712136 agaaaggatatgaagggaatagatagttttgttgatgttgttaaggtaattgaaaaggctgttaatgagataaaaaatgaacctcttaaaaaattagaag 39712037  T
Q  331 actggtttgaattaagtaaa 350  Q
    ||||||||||||||||||||    
T  39712036 actggtttgaattaagtaaa 39712017  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 135 - 320
Target Start/End: Complemental strand, 11527854 - 11527669
Alignment:
Q  135 ttttgtttcacatgtgattgcagagatagacttgggtactcaataccagaggggtattttgggaactgtgtagtgtctaaaagtgcaaccatgaagagaa 234  Q
    |||| |||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  11527854 ttttctttcacatgtgattgcagagatagacttggttatccaataccagaggggtattttgggaactgtttagtgtctaaaagtgcaacaatgaagagaa 11527755  T
Q  235 aggatatgaagggaataaatagttttgttgatgttgttaaggtaattgaaaaggctgttaatgagataaaaaatgaacctcttaaa 320  Q
    |||||||||| |||  |||||||||||||||||| ||||||||||||||||||| ||||  |||| ||||||||||||||||||||    
T  11527754 aggatatgaaaggagaaaatagttttgttgatgtcgttaaggtaattgaaaaggttgttgctgaggtaaaaaatgaacctcttaaa 11527669  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 39712363 - 39712278
Alignment:
Q  4 ataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcat 89  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39712363 ataatgaaatcaacgtgccaaaatttatatctaaatttgttgtaacttctgcttttgtttgggctagtatggttgaagcaatgcat 39712278  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 11527979 - 11527907
Alignment:
Q  1 atgataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtat 73  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  11527979 atgataacgaaatcaacgcgccacaatttctatctaaatttgttgtaacttgtgctttcgtttgggctagtat 11527907  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 37953012 - 37953197
Alignment:
Q  135 ttttgtttcacatgtgattgcagagatagacttgggtactcaataccagaggggtattttgggaactgtgtagtgtctaaaagtgcaaccatgaagagaa 234  Q
    |||||||||||| ||||||||||||| ||||| |||||| ||||||| ||||||||||| || |||||| ||| || |||   |||||| ||||||||||    
T  37953012 ttttgtttcacaggtgattgcagagacagactagggtacacaataccggaggggtatttcggaaactgtttagcgtttaatcatgcaacgatgaagagaa 37953111  T
Q  235 aggatatgaagggaataaatagttttgttgatgttgttaaggtaattgaaaaggctgttaatgagataaaaaatgaacctcttaaa 320  Q
      ||| |||| |||  | || |||||||  ||| ||||||||||||||| |||||  | | |||||| ||||||||||||||||||    
T  37953112 gagatgtgaaaggagaagatggttttgtgaatgctgttaaggtaattgagaaggcaataactgagatgaaaaatgaacctcttaaa 37953197  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 44905122 - 44905040
Alignment:
Q  3 gataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaat 85  Q
    ||||| |||||||||| |||| ||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||    
T  44905122 gataaggaaatcaacgcgccacaatttctatctaaatttgtcgtaacttgtgctttcgtttgggctagtatagttaaagcaat 44905040  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 28166278 - 28166196
Alignment:
Q  3 gataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaat 85  Q
    ||||| ||||||||||||||| |||||||| |||||||||| ||||||| |||||| |||||| ||||||| |||||||||||    
T  28166278 gataaagaaatcaacgtgccacaatttctaactaaatttgtcgtaacttgtgctttcgtttggtctagtatagttaaagcaat 28166196  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 37952911 - 37952975
Alignment:
Q  25 aatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcat 89  Q
    ||||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||||||    
T  37952911 aatttctatctaaatatgttgtaacttgtgcttttgtttgggttagtttggttaaagcaatgcat 37952975  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 37896433 - 37896385
Alignment:
Q  148 gtgattgcagagatagacttgggtactcaataccagaggggtattttgg 196  Q
    ||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  37896433 gtgattgtagagatagacttgggtacaaaataccagaggggtattttgg 37896385  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 37958644 - 37958704
Alignment:
Q  20 gccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaa 80  Q
    |||| ||||| ||||||||||||||||||||| || |||  ||||||||||||||||||||    
T  37958644 gccacaatttttatctaaatttgttgtaacttgtggtttcatttgggctagtatggttaaa 37958704  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 37958769 - 37958820
Alignment:
Q  148 gtgattgcagagatagacttgggtactcaataccagaggggtattttgggaa 199  Q
    ||||||| ||||| ||||||||||||  ||||||||||||||||||||||||    
T  37958769 gtgattgtagagaaagacttgggtacaaaataccagaggggtattttgggaa 37958820  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 40768229 - 40768147
Alignment:
Q  3 gataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaat 85  Q
    ||||| ||||||||||||||| ||||||||||||||||||| ||||||| || ||| |||||||||||||| |||||||||||    
T  40768229 gataaggaaatcaacgtgccacaatttctatctaaatttgtcgtaacttgtgatttcgtttgggctagtatagttaaagcaat 40768147  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 13228709 - 13228791
Alignment:
Q  3 gataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaat 85  Q
    ||||| |||||||||| |||| ||||||||||||||||||| ||||||| |||||| ||||||||||||||  ||||||||||    
T  13228709 gataaggaaatcaacgcgccacaatttctatctaaatttgtcgtaacttgtgctttcgtttgggctagtatatttaaagcaat 13228791  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 38757259 - 38757177
Alignment:
Q  3 gataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaat 85  Q
    ||||| |||||||||| || | ||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||    
T  38757259 gataaggaaatcaacgcgcaacaatttctatctaaatttgtcgtaacttgtgctttcgtttgggctagtatagttaaagcaat 38757177  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 34538742 - 34538660
Alignment:
Q  3 gataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaat 85  Q
    ||||| |||||||||| |||| ||||||||| |||||||||  |||||| |||||| |||||||||||||| |||||||||||    
T  34538742 gataaggaaatcaacgcgccacaatttctatgtaaatttgtcataacttatgctttcgtttgggctagtatagttaaagcaat 34538660  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 11149455 - 11149524
Alignment:
Q  4 ataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtat 73  Q
    |||| ||||||||||||||| ||||||||||| | ||||| ||||||| |||||| | ||||| ||||||    
T  11149455 ataaggaaatcaacgtgccacaatttctatctcattttgtcgtaacttgtgctttcgcttgggttagtat 11149524  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 6535431 - 6535356
Alignment:
Q  10 aaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaat 85  Q
    ||||||||| |||| ||||||||||||||||||  |||| || |||||| ||||| |||||||| |||||||||||    
T  6535431 aaatcaacgcgccacaatttctatctaaatttgccgtaatttgtgctttcgtttgagctagtatagttaaagcaat 6535356  T

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