View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_31 (Length: 368)
Name: NF1910_low_31
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 2 - 352
Target Start/End: Complemental strand, 33638374 - 33638024
Alignment:
| Q |
2 |
gatgattgtcaacatcttctttataatatttacggctctatctctctacatcagagaggttgtaagctcggtgatgacttttactctcgaaccaaaccca |
101 |
Q |
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| T |
33638374 |
gatgattgtcaacatcttctttataatatttacggctctatctctctacatcagagaggttgtaagcttggtagtgacttttactctcgaacaaacccca |
33638275 |
T |
|
| Q |
102 |
ttaaagtggtcactcttttgttttgttttcaccactttcttgtccctcgccatcaagttagccatgatccgtttacaaaacaagatcaatcgctacatca |
201 |
Q |
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|||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| |
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| T |
33638274 |
ttaaagtggtcactcttttgttttgtattcaccactttcctctccctcgccatcaagctagccatgatccgtttgcaaaacaagatcaaccgctacatca |
33638175 |
T |
|
| Q |
202 |
tactatttggaatgattctttgtgcttttgtgcttgtccttggctgctccctcatcatcatcttttaccatttcgctgtcaacatttacattacttttgc |
301 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33638174 |
tactgttgggaatgattctttgtgcttttgtgcttgtccttggctgctccctcatcatcatcttttaccatttcgctgtcaacatttacattacttttgc |
33638075 |
T |
|
| Q |
302 |
actttctcttgtccttataacattcctccgtgactactattatgtttgtag |
352 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33638074 |
actttctcttgtccttataacattcctccgtgactactattatgtttgtag |
33638024 |
T |
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