View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_32 (Length: 368)
Name: NF1910_low_32
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 2242613 - 2242963
Alignment:
| Q |
10 |
acatcatcacatggaccataacaatttttaccattatgaagattataattcttggaaaaatcatgagttgaaaagaatcctagagataccttatgcaaca |
109 |
Q |
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| T |
2242613 |
acatcatcacacggaccataacaatttttaccattgtgaagattataattcttggaagaatcatgagttgaaaagaatcctagagataccttatgcaaca |
2242712 |
T |
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| Q |
110 |
ccatgaacctaactttcttgttgcaaaactaaagaataaactttgccaatagatggtaaaggttcc--ataaataagatttgggacttcgaagtagtaaa |
207 |
Q |
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| T |
2242713 |
ccatgaacctaactttcttgttgcaaaactaaagaataaactttgccaatagatggtaaaggttccatataaataagatttgggacttcgaagtagtaaa |
2242812 |
T |
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| Q |
208 |
agaatcagttaaacccttc--------nnnnnnntagatgacatgttcttcttcacaaagtttcttaacctttgaaatgaagtcacaagaacatttgatg |
299 |
Q |
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| T |
2242813 |
agaatcagttaaacccttcaaaaaaaaataaaaatagatgacatgttcttcttcacaaagtttcttaacctttgaaatgaagtcacaagaacatttgatg |
2242912 |
T |
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| Q |
300 |
gtgcaagaaaaagcttcaataagcagtaaatcttctaaatcatcccatagt |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2242913 |
gtgcaagaaaaagcttcaataagcagtaaatcttctaaagcatcccatagt |
2242963 |
T |
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