View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_33 (Length: 367)
Name: NF1910_low_33
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 48051067 - 48051422
Alignment:
| Q |
11 |
tgagatgaatgctggaatacatgaataatgtgtattggtggttgctgaaaaacatgttggccattgaagaatgttgtgaacctgaatggtaaataagtat |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48051067 |
tgagatgaatgctggaatacatgaataatgtgtattggtggttgctgaaaaacatgttggccattgaagaatgttgtgaacctgaatggtaaataagtat |
48051166 |
T |
|
| Q |
111 |
aatactctctttgatacctttgttggtaaaccaagctatcacaagattaaatcacaagctatcagatttggtttaaatccagtcaaaaatagaaaaggaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48051167 |
aatactctctttgatacctttgttggtaaaccaagctatcacaagattaaatcacaagctatcagatttggtttaaatccagtcaaaaatagaaaaggaa |
48051266 |
T |
|
| Q |
211 |
aactagtagcagtctgcaatgttgttggagtctgcaatgtaacataccaacatcatctcttcaaagaccttgatatcagtctgcaatgtaacattcaaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48051267 |
aactagtagcagtctgcaatgttgttggagtctgcaatgtaacataccaacatcatctcttcaaagaccttgatatcagtctgcaatgtaacattcaaat |
48051366 |
T |
|
| Q |
311 |
tgattcatatggcaagagttgagagcttcaattgtttgctttagaatgttttataa |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48051367 |
tgattcatatggcaagagttgagagcttcaattgtttgctttagaatgttttataa |
48051422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 48043164 - 48043310
Alignment:
| Q |
13 |
agatgaatgctggaatacatgaataatgtgtattggtggttgctgaaaaacatgttggccattgaagaatgttgtgaacctgaat----ggtaaataagt |
108 |
Q |
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||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
48043164 |
agatgaatgctggaacacatgaatactgtgtattggtgttggctgaaaaacatgttggccattgaagaatattgtgaacctgtatggtaggtaaataagt |
48043263 |
T |
|
| Q |
109 |
ataatactctctttgatacctttgttggtaaaccaagctatcacaag |
155 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || ||| ||||| |
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| T |
48043264 |
ataatactctctttgatacctttgttggtaaacctagttattacaag |
48043310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 256 - 363
Target Start/End: Original strand, 48043370 - 48043477
Alignment:
| Q |
256 |
accaacatcatctcttcaaagaccttgatatcagtctgcaatgtaacattcaaattgattcatatggcaagagttgagagcttcaattgtttgctttaga |
355 |
Q |
| |
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||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
48043370 |
accaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttaga |
48043469 |
T |
|
| Q |
356 |
atgtttta |
363 |
Q |
| |
|
|||||||| |
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|
| T |
48043470 |
atgtttta |
48043477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 363
Target Start/End: Original strand, 48056588 - 48056695
Alignment:
| Q |
256 |
accaacatcatctcttcaaagaccttgatatcagtctgcaatgtaacattcaaattgattcatatggcaagagttgagagcttcaattgtttgctttaga |
355 |
Q |
| |
|
||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| || || || |||| |||||||||||||| || ||||| ||||| |
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| T |
48056588 |
accaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatagaatcctagggcagaagttgagagcttcagttctttgcgttaga |
48056687 |
T |
|
| Q |
356 |
atgtttta |
363 |
Q |
| |
|
|||||||| |
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|
| T |
48056688 |
atgtttta |
48056695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 48056402 - 48056532
Alignment:
| Q |
22 |
ctggaatacatgaataatgtgtattggtggttgctgaaaaacatgttggccattgaagaatgttgtgaacctgaatggtaaataagt-ataatactctct |
120 |
Q |
| |
|
|||||| |||||| || ||| | |||||| | ||||||||||||||||| | |||||||| ||||||| |||||||||| |||||| | | ||||||| |
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|
| T |
48056402 |
ctggaacacatgagtattgtttgttggtgttggctgaaaaacatgttggtctatgaagaatattgtgaatctgaatggtatataagtaagtagactctct |
48056501 |
T |
|
| Q |
121 |
ttgatacctttgttggtaaaccaagctatca |
151 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |
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|
| T |
48056502 |
ttgatacctttgatggtaaaccaagttatca |
48056532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 48045182 - 48045258
Alignment:
| Q |
260 |
acatcatctcttcaaaga-ccttgatatcagtctgcaatgtaacattcaaattgattcatatggcaagagttgagag |
335 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||||||| ||||||||||| |||||||| |||| |||||||||| |
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| T |
48045182 |
acatcatctcttcagcgaaccttgatatcaatctgcaatgcaacattcaaatagattcatagggcaggagttgagag |
48045258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 48037345 - 48037429
Alignment:
| Q |
280 |
ttgatatcagtctgcaatgtaacattcaaattgattcatatggcaagag-ttgagagcttcaattgtttgctttagaatgtttta |
363 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| | |||| || |||||||||| | || |||||||||||||| |||| |
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| T |
48037345 |
ttgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttagaatgcttta |
48037429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 48036089 - 48036147
Alignment:
| Q |
11 |
tgagatgaatgctggaatacatgaataatgtgtattggtggttgctgaaaaacatgttgg |
70 |
Q |
| |
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|||||||||||||||||||||||||| | ||||||| ||| | ||||||||||||||||| |
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|
| T |
48036089 |
tgagatgaatgctggaatacatgaatta-gtgtatttgtgttggctgaaaaacatgttgg |
48036147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 48043306 - 48043361
Alignment:
| Q |
164 |
acaagctatcagatttggtttaaatccagtcaaaaatagaaaaggaaaactagtag |
219 |
Q |
| |
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||||||||||||||| | |||||| ||||||||| || |||||| ||||||||||| |
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| T |
48043306 |
acaagctatcagattggatttaaagccagtcaaatatggaaaagaaaaactagtag |
48043361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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