View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_38 (Length: 341)
Name: NF1910_low_38
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_38 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 2813125 - 2813450
Alignment:
| Q |
16 |
atagatgaggaatgtataaatgagataaagatgctagctacatgtgatgtatcaattaattacatagagaaaattgtgagtaatggagagcaaacagttt |
115 |
Q |
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| T |
2813125 |
atagatgaggaatgtataaatgagataaagatgctagctacatgtgatgtatcaattaaatacatagagaaaattgtgagtaatggagagcaaacagttt |
2813224 |
T |
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| Q |
116 |
cggcgataagagaaacaaacaatgctaatgacttattcatagttgggagaggtcagggagattcttcgccactaacggaaggtttgacggattggagtga |
215 |
Q |
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| T |
2813225 |
cggcgataagagaaacaaacaatgctaatgacttattcatagttgggagaggtcagggagattcttcgccactaacggaaggtttgacggattggagtga |
2813324 |
T |
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| Q |
216 |
atgtcctgagttaggagccattggagatttgttagcttcttcagactttgaaacaagtgcttcagtgcttgttatgcatcaatatgttggctaaggtcca |
315 |
Q |
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| T |
2813325 |
atgtcccgagttaggagccattggagatttgttagcttcttcagactttgaaacaagtgcttcagtgcttgttatgcatcaatatgttggacaaggtcca |
2813424 |
T |
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| Q |
316 |
gaaggagaggatctttttgtatgtga |
341 |
Q |
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| T |
2813425 |
gaaggagaggatctttttgtatgtga |
2813450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 39236216 - 39236142
Alignment:
| Q |
208 |
tggagtgaatgtcctgagttaggagccattggagatttgttagcttcttcagactttgaaacaagtgcttcagtg |
282 |
Q |
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| T |
39236216 |
tggagtgagtgtcctgaattaggagcaattggtgatttgttagcatcatctgattttgcaacaattgcttcagtg |
39236142 |
T |
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