View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1910_low_4 (Length: 731)

Name: NF1910_low_4
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1910_low_4
NF1910_low_4
[»] chr5 (16 HSPs)
chr5 (129-722)||(17392453-17393046)
chr5 (39-625)||(17383660-17384248)
chr5 (42-442)||(17377292-17377688)
chr5 (469-673)||(17377685-17377888)
chr5 (270-527)||(17380099-17380361)
chr5 (256-508)||(13711792-13712044)
chr5 (276-511)||(19969213-19969448)
chr5 (49-416)||(20111903-20112273)
chr5 (342-511)||(19653554-19653723)
chr5 (19-67)||(17392415-17392463)
chr5 (39-145)||(19806841-19806947)
chr5 (103-164)||(13712177-13712238)
chr5 (108-164)||(19653901-19653957)
chr5 (291-415)||(19807100-19807224)
chr5 (105-164)||(1347936-1347995)
chr5 (265-408)||(9619102-9619245)
[»] chr1 (2 HSPs)
chr1 (42-397)||(26052742-26053092)
chr1 (494-722)||(26052508-26052732)
[»] chr2 (2 HSPs)
chr2 (259-511)||(15784813-15785065)
chr2 (41-164)||(15784594-15784717)
[»] scaffold1377 (1 HSPs)
scaffold1377 (366-416)||(1348-1398)
[»] chr3 (4 HSPs)
chr3 (82-164)||(24912840-24912922)
chr3 (356-404)||(32224417-32224465)
chr3 (84-164)||(32226540-32226620)
chr3 (356-425)||(24890631-24890699)
[»] chr6 (2 HSPs)
chr6 (369-416)||(14438257-14438304)
chr6 (521-599)||(16257988-16258065)
[»] scaffold0009 (2 HSPs)
scaffold0009 (103-145)||(40602-40644)
scaffold0009 (289-326)||(40809-40846)


Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 129 - 722
Target Start/End: Original strand, 17392453 - 17393046
Alignment:
Q  129 ccaaacttcaaactcttaacattgcaaaggtttgttcattatagttgctaatttttgccagttcttctattctattaagtattttttacaaatcctattt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17392453 ccaaacttcaaactcttaacattgcaaaggtttgttcattatagttactaatttttaccagttcttctattctattaagtattttttacaaatcctattt 17392552  T
Q  229 tgtctcggattgacattgacaggcgaagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaa 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17392553 tgtctcggattgacattgacaggcgaagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaa 17392652  T
Q  329 tttgaagttatagactatgaagcttgcgaagctgattttcgattcgcagcatatattttgcagaatgcgagacttttacaagttatgatcattcgccata 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||  ||||    
T  17392653 tttgaagttatagactatgaagcttgcgaagctgattttcgattcgcaacatatattttgcagaatgcgagacttttacaagttatgaccattcatcata 17392752  T
Q  429 ctcttcacccaaatccaatggagagccctcaatttttagaaaatttatcctcctgtccaagaatgtctcccacatgtaagctgaatctcagcagttccta 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17392753 ctcttcacccaaatccaatggagagccctcaatttttagaaaatttatcctcctgtccaagaatgtctcccacatgtaagctgaatctcagcagttccta 17392852  T
Q  529 gatgtatacctggtgtttttgttagtttcaatattaactactactgaatttgatggtttgaacaatataggcttattcaagtcaatggtcttccaatact 628  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17392853 gatgtatacctggtgtttttgttagtttcgatattcactactactgaatttgatggtttgaacaatataggcttattcaagtcaatggttttccaatact 17392952  T
Q  629 ttcatctttgcattgttttgttaactcaattttcgtgatgagccatgctaccttgtctgttaaattggatctacgcctttgtattgagaataat 722  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17392953 ttcatctttgcattgttttgttaactcaattttcgtgatgagccatgctaccttgtctgttaaattggatctacgcctttgtattgagcataat 17393046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 39 - 625
Target Start/End: Original strand, 17383660 - 17384248
Alignment:
Q  39 ccgtgtttgaaaacttaaccgaacttcaactattttggtctcgaggcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttca 138  Q
    ||||| ||||||||||||  ||||||||||||  |||||   || |||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||    
T  17383660 ccgtgcttgaaaacttaagggaacttcaactaacttggttcggacgcattcataactgggaggtggtagtgaaaatgctacagaattgtcccatacttca 17383759  T
Q  139 aactcttaacattgcaaaggtttgttcattatagttgctaatttttgccagttcttctattctattaagtattttttacaaatcctattttgtctcggat 238  Q
    |||||||| ||||  ||||||||||| ||||||||| ||||||||| |  |||||||| ||||||  ||||||||| ||| |||||||||||||||||||    
T  17383760 aactcttaccattctaaaggtttgtttattatagttactaatttttacaggttcttctcttctatcgagtattttt-acatatcctattttgtctcggat 17383858  T
Q  239 tgacattgacaggcgaagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagtta 338  Q
    ||      ||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17383859 tg------acaggcggagaattcagcaagcatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctaatctaacaaaatttgaagtta 17383952  T
Q  339 tagactatgaagcttgcgaagctgattttcgattcgcagcatatattttgcagaatgcgagacttttacaagttatgatcattcgccatactcttcaccc 438  Q
    |  ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | || ||||| |||| ||||||||||||||||    
T  17383953 tgcactatgaagcttgggaagctgattttcgattcgcaacatatattttgcagaatgcgagacttttgc-agatatgaccatttgccatactcttcaccc 17384051  T
Q  439 aaatccaatggagagccctcaatttttagaaaatttatcctcctgtccaagaatgtctcccacatgtaagc----------tgaatctcagcagttccta 528  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| |||||||||          |||||||||  |||||| |    
T  17384052 aaatccaatggagagccctcaatttttagaaaatttatcctcttgtccaaggatctctccctcatgtaagctgtcattgtttgaatctcaatagttccca 17384151  T
Q  529 gatgtatacctggtgtttttgttagtttcaatattaactactactgaatttgatggtttgaacaatataggcttattcaagtcaatggtcttccaat 625  Q
    |||||||||| ||| ||||||||| || ||||||| |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  17384152 gatgtataccgggtatttttgttacttacaatatttactactactggatttgatggttcgaacaatataggcttattcaaatcaatggtctaccaat 17384248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 42 - 442
Target Start/End: Original strand, 17377292 - 17377688
Alignment:
Q  42 tgtttgaaaacttaaccgaacttcaactattttggtctcgaggcatt------catgagtggcaggtggtagtgaaaatgctacagaattgtcccaaact 135  Q
    ||||||||||| |||||  ||||||||||| |||||||| | |||||      ||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  17377292 tgtttgaaaacataaccagacttcaactatcttggtctccaagcattagcgttcatgactgggaggtggtattgaaaatgctacagaattgtcccaaact 17377391  T
Q  136 tcaaactcttaacattgcaaaggtttgttcattatagttgctaatttttgccagttcttctattctattaagtattttttacaaatcctattttgtctcg 235  Q
    ||||||||||| ||||| ||||||||||| ||||||||| ||||||| | || |||||| | ||||||| ||||||||| ||||||||||||||||||||    
T  17377392 tcaaactcttaccattgtaaaggtttgtttattatagttactaatttatacccgttcttatcttctattgagtattttt-acaaatcctattttgtctcg 17377490  T
Q  236 gattgacattgacaggcgaagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaag 335  Q
    ||| ||||      |||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  17377491 gatcgaca------ggcgaataattcaacaaccataga---ttgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaactttaaag 17377581  T
Q  336 ttatagactatgaagcttgcgaagctgattttcgattcgcagcatatattttgcagaatgcgagacttttacaagttatgatcattcgccatactcttca 435  Q
    |||||| || ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||  ||||| ||||| ||||||    
T  17377582 ttataggctctgaagcttgcgaagctgattttcgattcgcaacatatattttgcgaaatgcgagacttttacaagttatgtccattcaccatagtcttca 17377681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 469 - 673
Target Start/End: Original strand, 17377685 - 17377888
Alignment:
Q  469 aaatttatcctcctgtccaagaatgtctcccacatgtaagctgaatctcagcagttcctagatgtatacctggtgtttttgttagtttcaatattaacta 568  Q
    ||||||||||||||||||||| || ||||||||||||||||||| ||  || |||||||||||||||  |||||||||| ||||||||||||| |  ||     
T  17377685 aaatttatcctcctgtccaaggatctctcccacatgtaagctgattc--agtagttcctagatgtatgtctggtgttttcgttagtttcaatacttgctt 17377782  T
Q  569 ctactgaatttgatggtttgaacaatataggcttattcaagtcaatggtcttccaatactttcatctttgcattgttttgttaactc-aattttcgtgat 667  Q
    ||||||||||||||||||| ||||||||||||||||  || ||| | |||| ||||||||||| ||||||||||||||||||| ||| |||||||| |||    
T  17377783 ctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgttagctcaaattttcgcgat 17377882  T
Q  668 gagcca 673  Q
    ||||||    
T  17377883 gagcca 17377888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 270 - 527
Target Start/End: Original strand, 17380099 - 17380361
Alignment:
Q  270 tagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagcttgcgaagctgattttcg 369  Q
    |||||||||||||||||||| ||||||||| ||| |||||||| ||||||||||||  |||| || | |||||||||||| | |  ||||||||||||||    
T  17380099 tagagcattgggaatatccatatcatgttctagattgtgtttcatctcatctaacatcatttaaaat-atagactatgaaccattggaagctgattttcg 17380197  T
Q  370 attcgcagcatatattttgcagaatgcga----gacttttacaagttatgatcattcgccatactct--tcacccaaatccaatggagagccctcaattt 463  Q
    | || |  |||||||||||||||||| ||    ||||||||||  |||||| |||| | ||| ||||  |||||||||||||||| |||||||||||| |    
T  17380198 aatcacgacatatattttgcagaatgtgattgtgacttttacagattatgaccatttgtcattctctcgtcacccaaatccaatgaagagccctcaatct 17380297  T
Q  464 ttagaaaatttatcctcctgtccaagaatgtctcccacatgtaagctgaatctcagcagttcct 527  Q
    ||||||||||||||| |||  ||||| || || | | ||||||||| ||| ||||| |||||||    
T  17380298 ttagaaaatttatccccctacccaaggatctccctcgcatgtaagccgaacctcagtagttcct 17380361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 256 - 508
Target Start/End: Complemental strand, 13712044 - 13711792
Alignment:
Q  256 gaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagcttgc 355  Q
    |||||||||||| ||||||  ||| ||||| || |||||||||||  || ||||||| |||||| ||||||  | |  | ||||| ||||||||| |       
T  13712044 gaattcaacaactatagagggttgagaataccctgatcatgttcctaaaggtgtttcctctcatttaacaacttgtcgaattataaactatgaagttgtg 13711945  T
Q  356 gaagctgattttcgattcgcagcatatattttgcagaatgcgagacttttacaagttatgatcattcgccatactcttcacccaaatccaatggagagcc 455  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||||||||   |||||| ||||    ||||||||| |||||| |||||||||||      
T  13711944 gaagctgatttccgatttgcagcatatattttgcagaatgagagacttttacggattatgaccattttttatactcttcgcccaaaaccaatggagagaa 13711845  T
Q  456 ctcaatttttagaaaatttatcctcctgtccaagaatgtctcccacatgtaag 508  Q
    | |||||||||||  |||||||||||||||||| ||| ||||| |||||||||    
T  13711844 cccaatttttagatgatttatcctcctgtccaacaatctctcctacatgtaag 13711792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 276 - 511
Target Start/End: Complemental strand, 19969448 - 19969213
Alignment:
Q  276 attgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagcttgcgaagctgattttcgattcgc 375  Q
    ||||| |||| ||| |||||||||| |||||||||| ||||||||| |||| || | |  ||| | ||||| |||||   ||||||||||||||||| ||    
T  19969448 attggaaatacccatatcatgttcccgaatgtgttttgtctcatcttacaacatgtaatattacacactatcaagctgtggaagctgattttcgatttgc 19969349  T
Q  376 agcatatattttgcagaatgcgagacttttacaagttatgatcattcgccatactcttcacccaaatccaatggagagccctcaatttttagaaaattta 475  Q
    | | |||||||||||||| || |||| |||| | |||||||  || | |||||||  |  | |||||||| ||||||| || |||||||||||| | |||    
T  19969348 aacgtatattttgcagaacgctagacatttaaaggttatgaaaatcctccatactagtttctcaaatccattggagagtccccaatttttagaagactta 19969249  T
Q  476 tcctcctgtccaagaatgtctcccacatgtaagctg 511  Q
    || |||||| |||| || |||||| |||||||||||    
T  19969248 tcttcctgttcaagtatctctcccgcatgtaagctg 19969213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 49 - 416
Target Start/End: Original strand, 20111903 - 20112273
Alignment:
Q  49 aaacttaaccgaacttcaactattttggtctcgaggcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaac 148  Q
    ||||||||| ||||||||||||| ||    ||| ||||||||||| |||   | ||||||||||||||| ||||| ||||||||||||||| | |||||     
T  20111903 aaacttaacagaacttcaactatattttcgtcgtggcattcatgactggggtgaggtagtgaaaatgctccagaaatgtcccaaacttcaagcacttaaa 20112002  T
Q  149 attgcaaaggtttgtt-----catta-----tagttgctaatttttgccagttcttctattctatt-aagtattttttacaaatcctattttgtctcgga 237  Q
    |||| |||||||||||     ||| |     ||||| || |||||| |  |||||| | || |||| |||||||||| |||||||||||||||| || ||    
T  20112003 attgtaaaggtttgtttgtcacatcaaaggatagttactgattttttcttgttctttt-ttgtattcaagtattttt-acaaatcctattttgtttccga 20112100  T
Q  238 ttgacattgacaggcgaagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagtt 337  Q
    ||||||      || |    |||||||||| | |||| ||||| |||| ||| || ||||||| |||||||||| ||||| ||| |||| || | |  ||    
T  20112101 ttgaca------ggggtttgattcaacaactaaagagaattggaaatacccatatgatgttcctgaatgtgttttgtctcgtctcacaacatgtaacatt 20112194  T
Q  338 atagactatgaagcttgcgaagctgattttcgattcgcagcatatattttgcagaatgcgagacttttacaagttatga 416  Q
     ||| ||||||||||| ||||  |||||||| ||| ||| ||||||||||||||||||| |||||| |||| |||||||    
T  20112195 gtaggctatgaagctttcgaacatgattttcaatttgcaacatatattttgcagaatgcaagacttctacaggttatga 20112273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 342 - 511
Target Start/End: Complemental strand, 19653723 - 19653554
Alignment:
Q  342 actatgaagcttgcgaagctgattttcgattcgcagcatatattttgcagaatgcgagacttttacaagttatgatcattcgccatactcttcacccaaa 441  Q
    ||||||||||||  |||||||||||||  ||  || |||| ||||||| |||||||||||| ||||||||||||| ||||  || ||||||| |||  ||    
T  19653723 actatgaagcttctgaagctgattttcttttttcaacatacattttgctgaatgcgagactcttacaagttatgaccattttccgtactcttgacctgaa 19653624  T
Q  442 tccaatggagagccctcaatttttagaaaatttatcctcctgtccaagaatgtctcccacatgtaagctg 511  Q
     |||| || |||||| || |||| | |  |||||||||||||||| | ||| || ||||| |||||||||    
T  19653623 accaacggggagcccccatttttcaaaggatttatcctcctgtcctacaatctcgcccacgtgtaagctg 19653554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 17392415 - 17392463
Alignment:
Q  19 agaaatcaattcatttgacaccgtgtttgaaaacttaaccgaacttcaa 67  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  17392415 agaaatcaattcatttgacacggtgtttgaaaacttaaccaaacttcaa 17392463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 19806841 - 19806947
Alignment:
Q  39 ccgtgtttgaaaacttaaccgaacttcaactattttggtctcgaggcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttca 138  Q
    ||||||||||||||||||| || |||||||||| |||||     |||  |||||| ||| | | ||||||||||||||| || |||||||||||||| ||    
T  19806841 ccgtgtttgaaaacttaactgaccttcaactatcttggtgcaatggcgctcatgattgggatgaggtagtgaaaatgctccaaaattgtcccaaactcca 19806940  T
Q  139 aactctt 145  Q
    |||||||    
T  19806941 aactctt 19806947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 13712238 - 13712177
Alignment:
Q  103 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaacattgcaaaggtttgtt 164  Q
    |||||||||||||||||| |  |||||||||||||||||||||   |||| |||||||||||    
T  13712238 ggtagtgaaaatgctacaaagctgtcccaaacttcaaactcttcgaattgtaaaggtttgtt 13712177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 19653957 - 19653901
Alignment:
Q  108 tgaaaatgctacagaattgtcccaaacttcaaactcttaacattgcaaaggtttgtt 164  Q
    |||||||||||||  ||||||||||||||||| ||||||| |||  |||||||||||    
T  19653957 tgaaaatgctacaatattgtcccaaacttcaagctcttaaaattaaaaaggtttgtt 19653901  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 415
Target Start/End: Original strand, 19807100 - 19807224
Alignment:
Q  291 atcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagcttgcgaagctgattttcgattcgcagcatatattttgca 390  Q
    |||||||||| ||||||||| | ||| ||||||||| || |||| |   ||||||| |||||   |||||||| |||| ||| ||| |||||||||||||    
T  19807100 atcatgttcctgaatgtgttacctctaatctaacaacatgtgaaatcgaagactatcaagctatggaagctgactttcaatttgcaacatatattttgca 19807199  T
Q  391 gaatgcgagacttttacaagttatg 415  Q
     ||||| ||  ||||||| ||||||    
T  19807200 aaatgcaagggttttacaggttatg 19807224  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 1347995 - 1347936
Alignment:
Q  105 tagtgaaaatgctacagaattgtcccaaacttcaaactcttaacattgcaaaggtttgtt 164  Q
    |||||||||||||  |||||||||| ||||||||||||||   |||| ||||||||||||    
T  1347995 tagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgtt 1347936  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 408
Target Start/End: Original strand, 9619102 - 9619245
Alignment:
Q  265 aaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagcttgcgaagctgat 364  Q
    ||||| |||| ||||| |||| ||| |||||||||| ||||||||||| |||||| |||||| || | |  || || |||||  || |   ||| |||||    
T  9619102 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaacattttacactatctagatgtggaacctgat 9619201  T
Q  365 tttcgattcgcagcatatattttgcagaatgcgagacttttaca 408  Q
    |||||||| |||   |||||||| ||||||||||||||| ||||    
T  9619202 tttcgatttgcaaggtatatttttcagaatgcgagacttctaca 9619245  T

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Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 42 - 397
Target Start/End: Complemental strand, 26053092 - 26052742
Alignment:
Q  42 tgtttgaaaacttaaccgaacttcaactattttggtctcgaggcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttcaaac 141  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||  |    
T  26053092 tgtttgaaaacttaaccgaacttgaactattttggtctcaaggcattcatgactgggaggtagtggtgaaaatgctacagaattgtcccaaacttcactc 26052993  T
Q  142 tcttaacattgcaaaggtttgttcattatagttgctaat--ttttgccagttcttctattctattaagtattttttacaaatcctattttgtctcggatt 239  Q
    |||| |||||||||||||||||| | ||||||| ||||   |||  ||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||    
T  26052992 tctttacattgcaaaggtttgtttaatatagttactaaaaatttcaccagttcttctcttctattgagtattttt-acaaatcctattttgtatcggatt 26052894  T
Q  240 gacattgacaggcgaagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttat 339  Q
    ||||      || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26052893 gaca------ggagaagtattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcatctcatctaacaaaatttgaagttat 26052800  T
Q  340 agactatgaagcttgcgaagctgattttcgattcgcagcatatattttgcagaatgcg 397  Q
    ||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||    
T  26052799 agactatgaagcttgtgaaactgatattcgattcgcaacatatattttgcagaatgcg 26052742  T

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Target: chr1; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 494 - 722
Target Start/End: Complemental strand, 26052732 - 26052508
Alignment:
Q  494 tctcccacatgtaagctgaatctcagcagttcctagatgtatacctggtgtttttgttagtttcaatattaactactactgaatttgatggtttgaacaa 593  Q
    |||||||||||||||||||||||||||||||||||||||    | | |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  26052732 tctcccacatgtaagctgaatctcagcagttcctagatg----ctttgtgtttttgttagtttcaatatttgctactactgaatttgatggtttgaacaa 26052637  T
Q  594 tataggcttattcaagtcaatggtcttccaatactttcatctttgcattgttttgttaactcaattttcgtgatgagccatgctaccttgtctgttaaat 693  Q
    |||||| |||| | | |||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26052636 tataggtttatactaatcaatggtccgccaatactttcatctgtgcattgttttgttaactcaattttcgtgatgagccatgctaccttgtctgttaaat 26052537  T
Q  694 tggatctacgcctttgtattgagaataat 722  Q
    ||||| ||| | ||||||||||| |||||    
T  26052536 tggatttacacttttgtattgagcataat 26052508  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 259 - 511
Target Start/End: Original strand, 15784813 - 15785065
Alignment:
Q  259 ttcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagcttgcgaa 358  Q
    |||||||||||||||| |||||||||| || |||||||||||  |||| || || |||||||||||||  | |  | ||  |  ||||||||||   ||     
T  15784813 ttcaacaaccatagagaattgggaatacccggatcatgttcctaaatgcgtctcctctcatctaacaacgtgtagaattgaactctatgaagctatggag 15784912  T
Q  359 gctgattttcgattcgcagcatatattttgcagaatgcgagacttttacaagttatgatcattcgccatactcttcacccaaatccaatggagagccctc 458  Q
    |||||||||||||||||| | || |||||  ||||||| ||||||||||| ||||||| |||| ||| |||||||  |||||| ||||| ||||||||      
T  15784913 gctgattttcgattcgcatcttacattttaaagaatgcaagacttttacaggttatgaccatttgccgtactcttaccccaaaaccaattgagagcccaa 15785012  T
Q  459 aatttttagaaaatttatcctcctgtccaagaatgtctcccacatgtaagctg 511  Q
    ||  ||||||| | |||||||||||||||| ||| ||||||||||||||||||    
T  15785013 aaaatttagaagacttatcctcctgtccaaaaatctctcccacatgtaagctg 15785065  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 15784594 - 15784717
Alignment:
Q  41 gtgtttgaaaacttaaccgaacttcaactattttggtctcgaggcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttcaaa 140  Q
    ||||||| |||||||| |||||||||||||| ||||  ||  ||||||||||| |     | ||||||||||||||||||||||||||| |||||||||     
T  15784594 gtgtttggaaacttaatcgaacttcaactatgttggattcatggcattcatgactatgttgaggtagtgaaaatgctacagaattgtccaaaacttcaag 15784693  T
Q  141 ctcttaacattgcaaaggtttgtt 164  Q
    ||||||  |||| |||||| ||||    
T  15784694 ctcttagaattgaaaaggtctgtt 15784717  T

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Target: scaffold1377 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 366 - 416
Target Start/End: Complemental strand, 1398 - 1348
Alignment:
Q  366 ttcgattcgcagcatatattttgcagaatgcgagacttttacaagttatga 416  Q
    ||||||| ||| |||||||||||||||||||||| |||||||||| |||||    
T  1398 ttcgatttgcaacatatattttgcagaatgcgaggcttttacaagatatga 1348  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 24912840 - 24912922
Alignment:
Q  82 aggcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaacattgcaaaggtttgtt 164  Q
    |||||||||||| ||  | | |||||||||||||||  || |||||||||||||||||||||| || |||  |||||||||||    
T  24912840 aggcattcatgattgagatgaggtagtgaaaatgctttaggattgtcccaaacttcaaactctaaaaattcaaaaggtttgtt 24912922  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 32224465 - 32224417
Alignment:
Q  356 gaagctgattttcgattcgcagcatatattttgcagaatgcgagacttt 404  Q
    ||||||||||||||||| | | ||||||||||||||||||| |||||||    
T  32224465 gaagctgattttcgatttgtaacatatattttgcagaatgcaagacttt 32224417  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 32226540 - 32226620
Alignment:
Q  84 gcattcatgagtggcaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaacattgcaaaggtttgtt 164  Q
    |||||||||| ||| | | ||||||| ||||||| ||  |||||||||||||||||||||||   ||| ||||||||||||    
T  32226540 gcattcatgattggtatgaggtagtgcaaatgctccattattgtcccaaacttcaaactcttccaatttcaaaggtttgtt 32226620  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 24890631 - 24890699
Alignment:
Q  356 gaagctgattttcgattcgcagcatatattttgcagaatgcgagacttttacaagttatgatcattcgcc 425  Q
    |||| ||| |||||||||||| ||||||||||| | ||||| ||||||||||| ||||||| | ||||||    
T  24890631 gaagttgactttcgattcgcaacatatattttg-aaaatgctagacttttacaggttatgaccgttcgcc 24890699  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 369 - 416
Target Start/End: Complemental strand, 14438304 - 14438257
Alignment:
Q  369 gattcgcagcatatattttgcagaatgcgagacttttacaagttatga 416  Q
    |||| ||| |||||||||||||||||||||| |||||||||| |||||    
T  14438304 gatttgcatcatatattttgcagaatgcgaggcttttacaagatatga 14438257  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 521 - 599
Target Start/End: Complemental strand, 16258065 - 16257988
Alignment:
Q  521 agttcctagatgtatacctggtgtttttgttagtttcaatattaactactactgaatttgatggtttgaacaatatagg 599  Q
    |||||||||||| |||||||||||||||||||||||| ||||  ||| |||| | | ||   |||||||||||||||||    
T  16258065 agttcctagatg-atacctggtgtttttgttagtttctatatacactgctaccggaattttcggtttgaacaatatagg 16257988  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 40602 - 40644
Alignment:
Q  103 ggtagtgaaaatgctacagaattgtcccaaacttcaaactctt 145  Q
    |||| |||||||||| ||||||||||| |||||||||||||||    
T  40602 ggtaatgaaaatgctccagaattgtccgaaacttcaaactctt 40644  T

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Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 40809 - 40846
Alignment:
Q  289 agatcatgttccagaatgtgtttcgtctcatctaacaa 326  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  40809 agatcatgttcctgaatgtgtttcgtctcatcttacaa 40846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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