View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_41 (Length: 328)
Name: NF1910_low_41
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 104 - 312
Target Start/End: Original strand, 29111177 - 29111384
Alignment:
| Q |
104 |
aatggatcataaaaaatgttagcaaatgt-ccttaacacaagtctagctttcgtataaaaatataatgtaattattattactttgataacaacttgactt |
202 |
Q |
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| T |
29111177 |
aatggatcataaaaaatgttagcaaatgttccttaacacaagtctagctttcgtataataatataatgtaattattattactttgataacaacttgactt |
29111276 |
T |
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| Q |
203 |
atatttttactacaaaatgttctattataaattcattaaacaatgaccttcattagaacacataaattttaattaattagggattttatgttgagaaagt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
29111277 |
atatttttactacaaaatgttctattataaattcattaaacaatgaccttcattagaacacataaattttaattaataagg--atttatgttgagaaagt |
29111374 |
T |
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| Q |
303 |
gtgttgatag |
312 |
Q |
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|||||||||| |
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| T |
29111375 |
gtgttgatag |
29111384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 29111074 - 29111139
Alignment:
| Q |
39 |
aaatatttttctttttnnnnnnngtatatgtcttatcgtatactctctaaattattgaatttcaaa |
104 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29111074 |
aaatatttttctttttaaaaaaagtatatatcttatcgtatactctctaaattattgaatttcaaa |
29111139 |
T |
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