View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1910_low_5 (Length: 710)

Name: NF1910_low_5
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1910_low_5
NF1910_low_5
[»] chr2 (37 HSPs)
chr2 (13-699)||(44624621-44625307)
chr2 (342-686)||(44615261-44615605)
chr2 (331-672)||(39152928-39153266)
chr2 (355-686)||(39138501-39138826)
chr2 (331-652)||(39396627-39396945)
chr2 (296-661)||(39216537-39216899)
chr2 (363-686)||(44895114-44895434)
chr2 (358-652)||(39371006-39371297)
chr2 (331-661)||(39196485-39196812)
chr2 (355-686)||(39472763-39473097)
chr2 (358-588)||(39380496-39380723)
chr2 (85-195)||(44748549-44748659)
chr2 (331-656)||(39387469-39387791)
chr2 (356-661)||(39205742-39206044)
chr2 (331-589)||(39421161-39421413)
chr2 (356-661)||(39223594-39223893)
chr2 (344-686)||(39604171-39604510)
chr2 (331-516)||(39413004-39413186)
chr2 (34-179)||(44749177-44749314)
chr2 (341-686)||(39099442-39099784)
chr2 (75-189)||(44615921-44616034)
chr2 (340-529)||(39188738-39188927)
chr2 (356-482)||(39478294-39478420)
chr2 (140-195)||(2363528-2363583)
chr2 (449-673)||(39493532-39493753)
chr2 (148-197)||(39471516-39471565)
chr2 (194-246)||(44749485-44749538)
chr2 (137-193)||(39131267-39131323)
chr2 (137-175)||(39379560-39379598)
chr2 (119-195)||(39419835-39419911)
chr2 (557-597)||(44749735-44749775)
chr2 (142-177)||(39372205-39372240)
chr2 (138-189)||(39493082-39493133)
chr2 (599-673)||(39144464-39144538)
chr2 (139-197)||(39179696-39179753)
chr2 (140-197)||(39139976-39140033)
chr2 (140-193)||(39503146-39503199)
[»] chr5 (4 HSPs)
chr5 (330-694)||(17060493-17060854)
chr5 (331-661)||(33562169-33562496)
chr5 (121-194)||(17061211-17061284)
chr5 (139-197)||(33563363-33563420)
[»] chr8 (7 HSPs)
chr8 (355-499)||(44730154-44730298)
chr8 (333-556)||(45342947-45343170)
chr8 (330-498)||(44949869-44950037)
chr8 (526-659)||(44950036-44950169)
chr8 (153-195)||(44947455-44947497)
chr8 (189-230)||(44949676-44949717)
chr8 (610-694)||(44730067-44730151)
[»] chr7 (1 HSPs)
chr7 (355-541)||(19808900-19809083)
[»] chr6 (1 HSPs)
chr6 (428-652)||(16114256-16114477)
[»] scaffold0283 (3 HSPs)
scaffold0283 (330-498)||(5849-6017)
scaffold0283 (153-195)||(3434-3476)
scaffold0283 (189-230)||(5656-5697)


Alignment Details
Target: chr2 (Bit Score: 651; Significance: 0; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 13 - 699
Target Start/End: Complemental strand, 44625307 - 44624621
Alignment:
Q  13 aatatagtggtctaatcctatttagcaggtttccactagtacaccacatttctttacattacatttttcaactgcaaaaacttgttcattcttctcaacc 112  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44625307 aatatagtagtctaatcctatttagcaggtttccactagtacatcacatttctttacattacatttttcaactgcaaaaacttgttcattcttctcaacc 44625208  T
Q  113 aagtaactgaatcaaatttctccatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacatgattagatacaaaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44625207 aagtaactgaatcaaatttctccatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacatgattagatacaaaat 44625108  T
Q  213 tgcaatatggatttgatattgtatgatgtaacataacaatgcatagagacataccataaatttaattagcaaaaccaatatggagggtctcaaacagttc 312  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44625107 tgcaatatggatttgatattgaatgatgtaacataacaatgcatagagacataccataaatttaattagcaaaaccaatatggagggtctcaaacagttc 44625008  T
Q  313 ttcagccatcttgtatccagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaat 412  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44625007 ttcagccatcttgtatccagcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaat 44624908  T
Q  413 ccgagaacctccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttg 512  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624907 ccgagaacctccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttg 44624808  T
Q  513 gtgagattgtcatcagtttttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcag 612  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44624807 gtgagattgtcatcagtttttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcctttcttaggaagtgggataatggggttcag 44624708  T
Q  613 tgtaatatccaaaacaatttttgctggatctgatgattctcgcaaattatcaagaatgtcaatttcctcacttgctccatcatcatc 699  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624707 tattatatccaaaacaatttttgctggatctgatgattctcgcaaattatcaagaatgtcaatttcctcacttgctccatcatcatc 44624621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 342 - 686
Target Start/End: Complemental strand, 44615605 - 44615261
Alignment:
Q  342 caaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatt 441  Q
    |||||| ||| | |||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| |||||    
T  44615605 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 44615506  T
Q  442 ttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtt---taatatttggtgagattgtcatcagtttttctagc 538  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||   ||||||||||||||||| ||||||||| |||||||    
T  44615505 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagc 44615406  T
Q  539 agatagatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaatttttgctg 638  Q
    |||||||| | ||   | |||||||||||||| ||||||||||| |||||||| ||||| ||  | ||||| ||| | ||||||||||||| ||||||||    
T  44615405 agatagatccagc---cttcatcaataatcaccgctttgtctcctttcttaggcagtggaatcgtagggtttagtattatatccaaaacaagttttgctg 44615309  T
Q  639 gatctgatgattctcgcaaattatcaagaatgtcaatttcctcacttg 686  Q
    ||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  44615308 gatctgatgattctcgcaaattatctagaatgccaatttcctcgcttg 44615261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 331 - 672
Target Start/End: Complemental strand, 39153266 - 39152928
Alignment:
Q  331 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 430  Q
    ||||||| || |||||||||  | ||||||||||| ||| ||| |||||  |||||||||||||||||||| || |||||| || |||||| ||||||||    
T  39153266 agcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaa 39153167  T
Q  431 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 530  Q
    ||||||||||||||||| || ||||||||||| ||| | || || ||||||||||| |||||||||||||||||||| || ||||||||| |||||||||    
T  39153166 ttttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctcttacacaaggtttaatcttcggtgagattctcatcagtt 39153067  T
Q  531 tttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaat 630  Q
     |||||||||| |||||| |||   | |||| ||||||||||| | |||||| ||||||    |||| ||||| |||||| || | |||||||| |||||    
T  39153066 gttctagcagaaagatgcagct---accatctataatcacagcatggtctccgttcttataccgtggaataattgggttctgtattatatccaacacaat 39152970  T
Q  631 ttttgctggatctgatgattctcgcaaattatcaagaatgtc 672  Q
    |||||||||||||||||||||| |||  ||||| ||||||||    
T  39152969 ttttgctggatctgatgattcttgcaggttatctagaatgtc 39152928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 355 - 686
Target Start/End: Complemental strand, 39138826 - 39138501
Alignment:
Q  355 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 454  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||||||||| |||||| ||||||||| ||| |||||||||||||||   ||||||||||    
T  39138826 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgtta 39138730  T
Q  455 gctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggcttt 554  Q
    |||||||  | | | ||||||||||||||||| |||||||||  ||||||||| || ||||||||| ||||||||| |||||||||| |||||| ||       
T  39138729 gctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtttaatcttcggtgagattctcatcagttgttctagcagaaagatgcagc--- 39138633  T
Q  555 catcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaatttttgctggatctgatgattctcg 654  Q
    ||||||||||||||||||| |  ||||| ||||||    |||| ||||| || ||| || | ||||||||||||| |||||||||||||||||||||| |    
T  39138632 catcatcaataatcacagcatgttctccattcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgattcttg 39138533  T
Q  655 caaattatcaagaatgtcaatttcctcacttg 686  Q
    || |||| | |||||| || |||| |||||||    
T  39138532 cagattaactagaatgacagtttcatcacttg 39138501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 331 - 652
Target Start/End: Original strand, 39396627 - 39396945
Alignment:
Q  331 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 430  Q
    |||||| ||| |||||||||  |  |||||||||||||| ||| ||||| ||||||||||||| ||||||| ||| | ||| || |||||| ||||||||    
T  39396627 agcaaccgatgcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaa 39396726  T
Q  431 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 530  Q
    ||||||||||||||| | |||| |||| |||| ||| | |||||||||| |||||| ||||||||||||||| ||||| ||||||||||| |||||||||    
T  39396727 ttttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctcttacacaaggtctaatagttggtgagattctcatcagtt 39396826  T
Q  531 tttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaat 630  Q
     ||||||||  |||||| ||||   ||| ||||||| |||| | |||||||||||||||   ||||| |||||||||||  || | |||||||||||||     
T  39396827 cttctagcacgtagatgtggct---atcctcaataaccacaccattgtctcccttcttacacagtggaataatggggttttgtattatatccaaaacaag 39396923  T
Q  631 ttttgctggatctgatgattct 652  Q
    | ||| ||||||||||||||||    
T  39396924 tcttgatggatctgatgattct 39396945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 296 - 661
Target Start/End: Complemental strand, 39216899 - 39216537
Alignment:
Q  296 agggtctcaaacagttcttcagccatcttgtatccagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcg 395  Q
    |||||||||||||||||   ||| |||||||    |||||||||| |||||||||  |  |||||||||||| ||||| |||||  |||||||||||| |    
T  39216899 agggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattg 39216800  T
Q  396 acaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttac 495  Q
    |||||| ||  ||||| ||||||||| |||||||||||| |||||||||  ||||||||| |||||| |||   ||||||||||||||||| ||||||||    
T  39216799 acaaaagcagaagaaaaccgagaaccaccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttac 39216700  T
Q  496 acaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagt 595  Q
    ||||||||||||||  ||||||||| ||||||||| |||||||  ||| ||  ||   | |||| ||||||||||||| |||||||||||||||   | |    
T  39216699 acaaggtttaatatgaggtgagattttcatcagttgttctagcgaataaatatgg---taatcagcaataatcacagcattgtctcccttcttacacaat 39216603  T
Q  596 gggataatggggttcagtgtaatatccaaaacaatttttgctggatctgatgattctcgcaaatta 661  Q
     | ||| | |||||| || | ||||||||||||| | ||| |||||||||||| ||| ||||||||    
T  39216602 tgaatagtagggttctgtatcatatccaaaacaagtcttgatggatctgatgagtctagcaaatta 39216537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 363 - 686
Target Start/End: Original strand, 44895114 - 44895434
Alignment:
Q  363 cttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaa 462  Q
    ||||||| ||| |||||  |||||||||||| ||||||| || |||||| || |||||| |||||||||||||||||||| |||| ||||||||||| ||    
T  44895114 cttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaa 44895213  T
Q  463 ctcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggctttcatcatca 562  Q
     | | | ||||||||||||||||  |||||||||| |||||||||| ||||||| |||  ||||||| ||||||||||||||||||| |    |||||||    
T  44895214 tttatgtgctagcttcaatgcttgttctcttacacgaggtttaataattggtgacattcccatcagtgtttctagcagatagatgcgcc---aatcatca 44895310  T
Q  563 ataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaatttttgctggatctgatgattctcgcaaattat 662  Q
    |||| || | | |||||  ||||||||   ||||| ||| | |||||| || | ||||||||||||| |||||| |||| |||||||||||||| | ||     
T  44895311 ataaccaaatcattgtcatccttcttactcagtggcatactagggttctgtattatatccaaaacaagttttgcaggatttgatgattctcgcagagtaa 44895410  T
Q  663 caagaatgtcaatttcctcacttg 686  Q
    | ||||| ||| ||| ||||||||    
T  44895411 ctagaatttcattttgctcacttg 44895434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 358 - 652
Target Start/End: Complemental strand, 39371297 - 39371006
Alignment:
Q  358 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 457  Q
    |||||||||||||||| |||||  |||||||||| | ||||||| ||||||||| || |||||| |||||| ||||| | |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  458 ttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggctttcat 557  Q
    ||||  ||| | |||||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||| |||||||||   |||  ||   | ||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctcttacacaaggctcaatatttggtgagattttcataagttgttctagcagcaggatttgg---taat 39371101  T
Q  558 catcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaatttttgctggatctgatgattct 652  Q
    || ||||||| ||| | |||||||||||||||   ||||| | |||||  ||| || | ||||||||||||| | ||| ||||||||||||||||    
T  39371100 cagcaataattacaacattgtctcccttcttactcagtggaacaatggtattctgtatcatatccaaaacaaatcttgatggatctgatgattct 39371006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 331 - 661
Target Start/End: Original strand, 39196485 - 39196812
Alignment:
Q  331 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 430  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||||    
T  39196485 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaa 39196584  T
Q  431 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 530  Q
    ||||||||||| || ||||||||||||||||| |||   ||||||||||||||||| | ||| |||||||||||||||| |||||||||| |||||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtttaatatctggtgagattctcatcagtt 39196684  T
Q  531 tttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaat 630  Q
     ||| |||||||||||  ||   | |||| |||||| |||||| || |||||||| |      |||| || |||||||||||| | || ||||||||||     
T  39196685 gttccagcagatagatttgg---taatcaacaataaccacagcattatctcccttttcccactgtggaatgatggggttcagtatcatttccaaaacaag 39196781  T
Q  631 ttttgctggatctgatgattctcgcaaatta 661  Q
    ||||| |||||||||||||||| ||| ||||    
T  39196782 ttttgatggatctgatgattcttgcagatta 39196812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 355 - 686
Target Start/End: Original strand, 39472763 - 39473097
Alignment:
Q  355 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 454  Q
    ||||||||||||||||||| ||||| ||||| ||||||| ||||||| || |||||| || |||||  ||||||||||||||||||||||||||||||||    
T  39472763 gacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgtta 39472862  T
Q  455 gctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatt------tggtgagattgtcatcagtttttctagcagatagatgc 548  Q
     ||||||| ||| | || ||||||||||| || | | ||||||||||  |||| ||       ||||||||| ||||||| | ||| | |||| |||||     
T  39472863 actttcaaatcaagtgcgagcttcaatgcgtctttttttacacaagggctaatcttcagtgacggtgagattttcatcagctgttccaacagaaagatgt 39472962  T
Q  549 ggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaatttttgctggatctgatga 648  Q
     |||   | |||||||||||||||| | |||||||||||||    |||| ||||| ||||||||| | ||||||| ||||| ||||||||||||||||||    
T  39472963 tgct---accatcaataatcacagcatggtctcccttcttacaccgtggaataatcgggttcagtattatatccagaacaaattttgctggatctgatga 39473059  T
Q  649 ttctcgcaaattatcaagaatgtcaatttcctcacttg 686  Q
    |||| ||| || | | ||||||||| |||| |||||||    
T  39473060 ttcttgcagatcaactagaatgtcagtttcatcacttg 39473097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 358 - 588
Target Start/End: Original strand, 39380496 - 39380723
Alignment:
Q  358 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 457  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||| || ||||||||| |||||| ||| ||||| ||||||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  458 ttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggctttcat 557  Q
    ||||| ||| | |||||| ||| |||||| ||||||||||||  || |||||| ||||||| | ||||||||| |||||||||| ||||||||||   ||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctcttacacaatcttcaatattcggtgagactctcatcagttgttctagcagaaagatgcggct---at 39380692  T
Q  558 catcaataatcacagctttgtctcccttctt 588  Q
    ||| || ||||||||| ||||||||||||||    
T  39380693 cataaaaaatcacagcattgtctcccttctt 39380723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 44748659 - 44748549
Alignment:
Q  85 tgcaaaaacttgttcattcttctcaaccaagtaactgaatcaaatttctccatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcac 184  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44748659 tgcaaaaacttgttgattcttcccaatcaagtaactgaatcaaatttcttcatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcac 44748560  T
Q  185 ttcatcaaaac 195  Q
    ||||| |||||    
T  44748559 ttcataaaaac 44748549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 331 - 656
Target Start/End: Original strand, 39387469 - 39387791
Alignment:
Q  331 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 430  Q
    ||||||| || |||||||||  |  ||||||||||| |||||||||  | |||  |||||||| ||||||| ||  ||||| || |||||  ||||||||    
T  39387469 agcaacaaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaa 39387568  T
Q  431 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 530  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | | ||||||||| || ||| ||||||||| || |||||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctttttttacacaagtttcaatttttggtgaggttctcatcagtt 39387668  T
Q  531 tttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaat 630  Q
     |||||||| || |||  ||   | |||| ||||||||||||  |||||  |||| | |   ||||| ||||  ||||||| | | |||||||||||||     
T  39387669 gttctagcatatggatttgg---taatcagcaataatcacagaattgtcaaccttttgacacagtggaataacagggttcaatatcatatccaaaacaag 39387765  T
Q  631 ttttgctggatctgatgattctcgca 656  Q
    ||||| ||| || |||||||||||||    
T  39387766 ttttgatgggtccgatgattctcgca 39387791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 356 - 661
Target Start/End: Original strand, 39205742 - 39206044
Alignment:
Q  356 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 455  Q
    |||||||||| ||||||| ||  | |||||  |||||||||||||| || |||||| || |||||| ||| |||||||||||||||||||||||| ||||    
T  39205742 acttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttag 39205841  T
Q  456 ctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggctttc 555  Q
    ||||||| |||   ||||||||||||||||  ||||| |||||||||| ||||  |||||||||| ||||||||| ||| |||||||| ||  ||   |     
T  39205842 ctttcaagtcaaatgctagcttcaatgctttttctctcacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttgg---ta 39205938  T
Q  556 atcatcaataatcacagctttgtctcccttcttagga-agtgggataatggggttcagtgtaatatccaaaacaatttttgctggatctgatgattctcg 654  Q
    |||| ||||||||||| | || |||||||| || | | |||||  | |||||||||||| | || |||||||||| ||||| |||||||| ||||||| |    
T  39205939 atcagcaataatcacaacattatctccctt-ttggcacagtggagtgatggggttcagtatcatttccaaaacaagttttgatggatctgctgattcttg 39206037  T
Q  655 caaatta 661  Q
    || ||||    
T  39206038 cagatta 39206044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 331 - 589
Target Start/End: Original strand, 39421161 - 39421413
Alignment:
Q  331 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 430  Q
    ||||||| || |||||||||  |  |||||||||||||  |||||||||  ||||   ||||| ||||||| || |||||| |||||||||   |||  |    
T  39421161 agcaacaaatgcaaaaagctccaacacttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaacc---aaatta 39421257  T
Q  431 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 530  Q
    |||||||||||||||| ||| ||||||||||| ||| | || |||||||||||||| ||| ||||||||| |||||||| |||||||||| |||||||||    
T  39421258 ttttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttcttcttttacacaagttttaatatgtggtgagattttcatcagtt 39421357  T
Q  531 tttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcccttctta 589  Q
     |||||||||| ||||| ||  ||| || ||||||||| || | |||||||||||||||    
T  39421358 gttctagcagaaagatgtgg--ttc-tcttcaataatcgcatcattgtctcccttctta 39421413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 356 - 661
Target Start/End: Complemental strand, 39223893 - 39223594
Alignment:
Q  356 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 455  Q
    |||||||||||||||||  ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||| ||||||||||| |||||||||||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  456 ctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgcggctttc 555  Q
    |||| || |||   ||||||||||||||||  |||||  ||||||||| ||||| |||||||||| ||||||||| ||| || |||| |||  ||   |     
T  39223793 cttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagtagatggatttgg---ta 39223697  T
Q  556 atcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaatttttgctggatctgatgattctcgc 655  Q
    ||||  ||||||||||   ||||||||||| | |    |||| || |||||||||||| | || |||||||||| ||||| |||||||||||||||| ||    
T  39223696 atcagtaataatcaca---ttgtctcccttttgacaccgtggaatgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgc 39223600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 344 - 686
Target Start/End: Complemental strand, 39604510 - 39604171
Alignment:
Q  344 aaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatttt 443  Q
    ||||||||||  |||||||||||||| ||| ||| |  |||||||||||| |||| ||  | |||||| || |||||  |||   ||||||| |||||||    
T  39604510 aaaagctttaaaacttcatcttcatcgaaagaaggagccaatccataaattgacacaaggagtagaaaacccagaactgccaccaaattttcggtatttt 39604411  T
Q  444 ctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagata 543  Q
    |  | ||||||| |||||| | | | |||||||||| |||||| |||||||||| ||||||||||| ||||  |||| ||||||||| ||  ||||||      
T  39604410 cacttatgttagatttcaaattaagtgctagcttcattgcttcttctcttacacgaggtttaatatgtggtttgattctcatcagttgtttgagcagaag 39604311  T
Q  544 gatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaatttttgctggatct 643  Q
     |||   ||   |||||||||||| ||||| ||||||||| |||||     | | |||||||| ||| || | ||||||||||||| ||||| |||||||    
T  39604310 aatgtctct---atcatcaataattacagcattgtctcccatcttatacttttgaataatgggattctgtattatatccaaaacaacttttgatggatct 39604214  T
Q  644 gatgattctcgcaaattatcaagaatgtcaatttcctcacttg 686  Q
    |||||| || ||| |||||| ||||| ||| |||| |||||||    
T  39604213 gatgatccttgcagattatctagaatttcagtttcgtcacttg 39604171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 331 - 516
Target Start/End: Original strand, 39413004 - 39413186
Alignment:
Q  331 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 430  Q
    ||||||| || |||||||||  | || |||||||||||| ||| |||||  ||||||| |||  ||||||| ||| ||||| |  |||||| |||||||     
T  39413004 agcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagag 39413103  T
Q  431 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtga 516  Q
    ||||| ||||||||||||| |||||||||||| ||| | |||||||||||||||   ||| |||||||||||||  ||||||||||    
T  39413104 ttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgct---tcttttacacaaggtttgttatttggtga 39413186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 44749177 - 44749314
Alignment:
Q  34 ttagcaggtttccactagtacaccacatttctttacattacatttttcaactgcaaaaacttgttcattcttctcaaccaagtaactgaatcaaatttct 133  Q
    |||||||||||||||||   ||||||||||||||    || ||||| | | ||||||| |||||| |||||||||| ||||||||||||||||| |||||    
T  44749177 ttagcaggtttccacta---caccacatttcttt----tagattttcctagtgcaaaatcttgttgattcttctcagccaagtaactgaatcaa-tttct 44749268  T
Q  134 ccatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaa 179  Q
     ||||||||||| |||||||| |||||||| ||||||||| |||||    
T  44749269 tcatcttgataacattctcaataaaatctgaaaggtgtaaaaaaaa 44749314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 341 - 686
Target Start/End: Complemental strand, 39099784 - 39099442
Alignment:
Q  341 ccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtat 440  Q
    |||||||||||||  |||||||||||||||||| ||| |  ||||  |||||| |||| ||  | |||||| || |||||| |||  ||||||||||||     
T  39099784 ccaaaaagctttaaaacttcatcttcatcaaaagaaggagccaatttataaattgacagaaggagtagaaaaccaagaaccgccaccgaattttcagtag 39099685  T
Q  441 tttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcag 540  Q
    ||||  | ||   || |||||||| | | || |||||||  ||||| ||||||||||||||||| |||| |||||||||| ||||||||| ||| |||||    
T  39099684 tttcacttataaaagatttcaacttaagtgccagcttcatcgcttcttctcttacacaaggtttgatatgtggtgagattctcatcagttgttcgagcag 39099585  T
Q  541 atagatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaatttttgctgga 640  Q
    |   |||   |||   ||||||||||| ||||| ||||||||| |||||     | | |||||||| ||| || | ||||||||||| | ||||| ||||    
T  39099584 aagaatgtctctt---tcatcaataattacagcattgtctcccatcttatacttttgaataatgggattctgtattatatccaaaacgacttttgatgga 39099488  T
Q  641 tctgatgattctcgcaaattatcaagaatgtcaatttcctcacttg 686  Q
    |||||| || || ||| |||||| ||||| ||| |||| |||||||    
T  39099487 tctgataatccttgcagattatctagaatttcagtttcgtcacttg 39099442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 44616034 - 44615921
Alignment:
Q  75 atttttcaactgcaaaaacttgttcattcttctcaaccaagtaactgaatcaaatttctccatcttgataagattctcaacaaaatctgcaaggtgtaag 174  Q
    ||||||| | |||| ||||||||| || ||||||  |||| |||||||||||||||||| ||||||||  |  |||||||||||||||||||||||||||    
T  44616034 atttttctagtgcagaaacttgttgatccttctcggccaattaactgaatcaaatttcttcatcttgaatat-ttctcaacaaaatctgcaaggtgtaag 44615936  T
Q  175 aaaaattcacttcat 189  Q
    |||||||||| ||||    
T  44615935 aaaaattcacatcat 44615921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 340 - 529
Target Start/End: Original strand, 39188738 - 39188927
Alignment:
Q  340 tccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagta 439  Q
    ||||||||||||||  || ||||||||||  ||| ||| |  ||| |||||||| || | ||  | |||||| || |||||| ||||||||||| || ||    
T  39188738 tccaaaaagctttaaaacatcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccatta 39188837  T
Q  440 ttttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagt 529  Q
    |||||||||||||||||||| || ||| | ||||| |||| ||| || |||||||||  ||||||||| |  ||||||||| ||||||||    
T  39188838 ttttctttcatgttagcttttaaatcaagtgctagtttcattgcatcctctcttacatgaggtttaatgtcaggtgagattctcatcagt 39188927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 356 - 482
Target Start/End: Original strand, 39478294 - 39478420
Alignment:
Q  356 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 455  Q
    |||||| |||| || ||| ||||| ||||||||||||| ||||||| || ||||||  | |||||  || |||||||||||||||||||| | |||| ||    
T  39478294 acttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaag 39478393  T
Q  456 ctttcaactcacgcgctagcttcaatg 482  Q
    ||||||| ||| | |||||||||||||    
T  39478394 ctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 2363583 - 2363528
Alignment:
Q  140 tgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaac 195  Q
    |||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||    
T  2363583 tgataagattctgaacaaaatctgcaaggtgcaggaaaatttcacttcatcaaaac 2363528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 449 - 673
Target Start/End: Original strand, 39493532 - 39493753
Alignment:
Q  449 atgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagatagatgc 548  Q
    |||||||||||||  ||| | |||||||||| |||||| ||| |||||  |||| |||||| |||||||||| || |||||| ||| ||||||   |||     
T  39493532 atgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcagaagaatgt 39493631  T
Q  549 ggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaatttttgctggatctgatga 648  Q
    ||||   ||||||||||||  |||| | ||||||  |||||     |   |||||||||||| || | ||||||||||||| ||||| ||||||||||||    
T  39493632 ggct---atcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatccaaaacaacttttgatggatctgatga 39493728  T
Q  649 ttctcgcaaattatcaagaatgtca 673  Q
    | || ||| || | |||||||||||    
T  39493729 tccttgcagataaccaagaatgtca 39493753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 39471516 - 39471565
Alignment:
Q  148 ttctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacat 197  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||||    
T  39471516 ttctcaacaaaatctgcaaggtacaaaaaaaattcacttcatcaaaacat 39471565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 44749485 - 44749538
Alignment:
Q  194 acatgattagatacaaaattgcaatatggatttgat-attgtatgatgtaacat 246  Q
    ||||||||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  44749485 acatgattagatacaaaattggaatatggatttgataattatatgatgtaacat 44749538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 39131323 - 39131267
Alignment:
Q  137 tcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaa 193  Q
    |||||| ||||||||| ||||||||||||||||||||||||| || ||| |||||||    
T  39131323 tcttgaaaagattctcgacaaaatctgcaaggtgtaagaaaatttaactccatcaaa 39131267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 39379560 - 39379598
Alignment:
Q  137 tcttgataagattctcaacaaaatctgcaaggtgtaaga 175  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  39379560 tcttgataagattctcaacaaaatctgcaaggtgcaaga 39379598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 39419835 - 39419911
Alignment:
Q  119 ctgaatcaaatttctccatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaac 195  Q
    |||||||||||| || | || | ||||||||||||||||||||||| ||||  || ||||||| | |||||||||||    
T  39419835 ctgaatcaaattgcttcctccttataagattctcaacaaaatctgcgaggtccaaaaaaaattaatttcatcaaaac 39419911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 597
Target Start/End: Complemental strand, 44749775 - 44749735
Alignment:
Q  557 tcatcaataatcacagctttgtctcccttcttaggaagtgg 597  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  44749775 tcatcaataatcacagctttgtcacccttcttaggcagtgg 44749735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 39372240 - 39372205
Alignment:
Q  142 ataagattctcaacaaaatctgcaaggtgtaagaaa 177  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39372240 ataagattctcaacaaaatctgcaaggtgcaagaaa 39372205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 39493082 - 39493133
Alignment:
Q  138 cttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcat 189  Q
    ||||||||||||||  |||||| |||||||||||||||||| | ||||||||    
T  39493082 cttgataagattcttgacaaaacctgcaaggtgtaagaaaattccacttcat 39493133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 599 - 673
Target Start/End: Complemental strand, 39144538 - 39144464
Alignment:
Q  599 ataatggggttcagtgtaatatccaaaacaatttttgctggatctgatgattctcgcaaattatcaagaatgtca 673  Q
    ||||| |||||| || | ||||||||||||| ||||| ||||||||||||| || | | |||| |||||||||||    
T  39144538 ataatcgggttctgtattatatccaaaacaacttttgatggatctgatgatccttgaagattaccaagaatgtca 39144464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 39179753 - 39179696
Alignment:
Q  139 ttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacat 197  Q
    |||||||||| || ||||||||||||||| || ||| ||| ||||||||||||||||||    
T  39179753 ttgataagatgcttaacaaaatctgcaagatgcaag-aaatttcacttcatcaaaacat 39179696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 39140033 - 39139976
Alignment:
Q  140 tgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacat 197  Q
    |||||||||  |||||||| |||| |||||  ||||||| ||||||||||||||||||    
T  39140033 tgataagatcttcaacaaattctgtaaggtacaagaaaatttcacttcatcaaaacat 39139976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 39503146 - 39503199
Alignment:
Q  140 tgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaa 193  Q
    ||||||| |||| |||||||||||||||||  || |||| ||||||||||||||    
T  39503146 tgataagtttctgaacaaaatctgcaaggtacaacaaaatttcacttcatcaaa 39503199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 330 - 694
Target Start/End: Complemental strand, 17060854 - 17060493
Alignment:
Q  330 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 429  Q
    ||||||||||| ||||||| |  | ||||||||||| |||||||||||||  ||||||||||| |||||| ||||| |||||||||||||||||||| ||    
T  17060854 cagcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatga 17060755  T
Q  430 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagt 529  Q
    || |||||||||| |||| |||||||||||||||||| | ||||||||||| ||||| ||| ||||||||| ||||||||||||||| ||| ||||||||    
T  17060754 atattcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttcgtcttttacacaagatttaatatttggtgacattatcatcagt 17060655  T
Q  530 ttttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaa 629  Q
    | |||||||| | |||||||||||||   ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| | | | |||||||||||    
T  17060654 tgttctagcataaagatgcggctttc---atcaataatcacaactttgtctcccttcttaggtagtggaataatggggttcattattacatccaaaacaa 17060558  T
Q  630 tttttgctggatctgatgattctcgcaaattatcaagaatgtcaatttcctcacttgctccatca 694  Q
    |||||| |||||| ||||||||| |||||||| | |||||||||  |||||||||||||||||||    
T  17060557 tttttgatggatccgatgattcttgcaaattaactagaatgtcagattcctcacttgctccatca 17060493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 331 - 661
Target Start/End: Complemental strand, 33562496 - 33562169
Alignment:
Q  331 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 430  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||| ||    
T  33562496 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaa 33562397  T
Q  431 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtt 530  Q
      |||||||||||||||||||||||||||||| |||   ||||||||||||||||| | ||| |||||||||| ||||| |||||||||| |||||||||    
T  33562396 aattcagtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggttcaatatctggtgagattctcatcagtt 33562297  T
Q  531 tttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaacaat 630  Q
     ||| || ||||||||  ||   | |||| ||||||| ||| | ||||||||||| | |   ||||| |  |||||||||||| | || ||||||||||     
T  33562296 gttccagaagatagatttgg---taatcaacaataatgacaacattgtctcccttttgacacagtggaaagatggggttcagtatcatttccaaaacaag 33562200  T
Q  631 ttttgctggatctgatgattctcgcaaatta 661  Q
    ||||| |||||||||||||||| ||| ||||    
T  33562199 ttttgatggatctgatgattcttgcagatta 33562169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 17061284 - 17061211
Alignment:
Q  121 gaatcaaatttctccatcttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaa 194  Q
    |||||||||| || | |||||||||||||||||||||||||||||| |  ||| |||| |||||||||||||||    
T  17061284 gaatcaaattccttcctcttgataagattctcaacaaaatctgcaatggataacaaaatttcacttcatcaaaa 17061211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 33563420 - 33563363
Alignment:
Q  139 ttgataagattctcaacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaacat 197  Q
    |||||||||| || ||||||||||||||| || ||| ||| ||||||||||||||||||    
T  33563420 ttgataagatgcttaacaaaatctgcaagatgcaag-aaatttcacttcatcaaaacat 33563363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 4e-52; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 355 - 499
Target Start/End: Complemental strand, 44730298 - 44730154
Alignment:
Q  355 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 454  Q
    |||||||||| ||||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  44730298 gacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgtta 44730199  T
Q  455 gctttcaactcacgcgctagcttcaatgcttcatctcttacacaa 499  Q
    |||||||||||| | ||||||||||| ||||||||||||||||||    
T  44730198 gctttcaactcatgtgctagcttcaaagcttcatctcttacacaa 44730154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 333 - 556
Target Start/End: Complemental strand, 45343170 - 45342947
Alignment:
Q  333 caacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaatt 432  Q
    |||||||| |||||||||  | ||||||||||| ||||||| ||||| ||||| ||| ||| |||||||||| |||||| || ||||| | ||| || ||    
T  45343170 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 45343071  T
Q  433 ttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttt 532  Q
    |||||||||| |||||| |||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||| ||||  ||||| ||||||||| |    
T  45343070 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgt 45342971  T
Q  533 tctagcagatagatgcggctttca 556  Q
    ||||| ||||||||| | ||||||    
T  45342970 tctaggagatagatgtgcctttca 45342947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 330 - 498
Target Start/End: Original strand, 44949869 - 44950037
Alignment:
Q  330 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 429  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  44949869 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 44949968  T
Q  430 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacaca 498  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||||||||| |||||    
T  44949969 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctctaacaca 44950037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 526 - 659
Target Start/End: Original strand, 44950036 - 44950169
Alignment:
Q  526 cagtttttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggt--tc-agtgtaatatcc 622  Q
    ||||| |||||| ||||||| |||||||||||   ||||||||||||||||||||||||||||||| | ||| |  |||||||  || ||| | ||||||    
T  44950036 cagttgttctagaagatagacgcggctttcat---caataatcacagctttgtctcccttcttaggcaatggaaatatggggtcgtctagtattatatcc 44950132  T
Q  623 aaaacaatttttgctggatctgatgattctcgcaaat 659  Q
    ||||||||||| |||  ||||||||||||||||||||    
T  44950133 aaaacaattttcgctatatctgatgattctcgcaaat 44950169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 44947455 - 44947497
Alignment:
Q  153 aacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaac 195  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  44947455 aacaaaatctgcaaggtgtaagaaaaattcacttgatcaaaac 44947497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 44949676 - 44949717
Alignment:
Q  189 tcaaaacatgattagatacaaaattgcaatatggatttgata 230  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  44949676 tcaagacatgattagatacaaaattgcaatatggatttgata 44949717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 694
Target Start/End: Complemental strand, 44730151 - 44730067
Alignment:
Q  610 cagtgtaatatccaaaacaatttttgctggatctgatgattctcgcaaattatcaagaatgtcaatttcctcacttgctccatca 694  Q
    |||||| ||||||||||| ||||| ||| |||| |||||||||||||||| | | ||| |||||  || |||||||| |||||||    
T  44730151 cagtgttatatccaaaactattttcgctagatccgatgattctcgcaaataaactagagtgtcagatttctcacttgttccatca 44730067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 355 - 541
Target Start/End: Complemental strand, 19809083 - 19808900
Alignment:
Q  355 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 454  Q
    ||||||||||||||||||||||||| ||||| ||||||  ||||||| || |||||| || |||||| ||| ||||||||||||| |||   ||||||||    
T  19809083 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtacttt---tcatgtta 19808987  T
Q  455 gctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcaga 541  Q
    |||||||| ||| | ||||||||||||| ||| |||||||||| ||||||||| || ||||||||| ||||||||| ||||||||||    
T  19808986 gctttcaaatcaagtgctagcttcaatgtttcttctcttacaccaggtttaatcttcggtgagattctcatcagttgttctagcaga 19808900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 428 - 652
Target Start/End: Complemental strand, 16114477 - 16114256
Alignment:
Q  428 gaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatca 527  Q
    ||||||| |||||| ||| |||||| ||||||||| || |||||||||||||||||||  |||||||||| |||||||||| ||||||| ||| ||||||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttttctcttacacgaggtttaatagttggtgatattctcatca 16114378  T
Q  528 gtttttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcccttcttaggaagtgggataatggggttcagtgtaatatccaaaac 627  Q
    ||| ||||| |||||||||| ||| |   ||||||||||||||||| |||||||||||||||   |||||  ||  ||||||| || | |||||||||||    
T  16114377 gttcttctaacagatagatgtggcat---tcatcaataatcacagcattgtctcccttcttacacagtggagtaccggggttctgtattatatccaaaac 16114281  T
Q  628 aatttttgctggatctgatgattct 652  Q
    || | ||| |||||||| |||||||    
T  16114280 aagtcttgatggatctgctgattct 16114256  T

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Target: scaffold0283 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 330 - 498
Target Start/End: Original strand, 5849 - 6017
Alignment:
Q  330 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 429  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  5849 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 5948  T
Q  430 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacaca 498  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||||||||| |||||    
T  5949 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctctaacaca 6017  T

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Target: scaffold0283; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 3434 - 3476
Alignment:
Q  153 aacaaaatctgcaaggtgtaagaaaaattcacttcatcaaaac 195  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  3434 aacaaaatctgcaaggtgtaagaaaaattcacttgatcaaaac 3476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 5656 - 5697
Alignment:
Q  189 tcaaaacatgattagatacaaaattgcaatatggatttgata 230  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  5656 tcaagacatgattagatacaaaattgcaatatggatttgata 5697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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