View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_52 (Length: 299)
Name: NF1910_low_52
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 48597431 - 48597144
Alignment:
| Q |
1 |
tacagcaatttcctaatacctccaatgctactttcacagccattaacggtggcacttgtgtatgctggaacaacgctcaaagatatatctgatgtgacac |
100 |
Q |
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| T |
48597431 |
tacagcaatttcctaatacctccaatgctactttcacagccattaacggtggcacttgtgtatgctggaacaacgctcaaagatatatctgatgtgacac |
48597332 |
T |
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| Q |
101 |
atggttggggagagttctcaaagactcgttgggtaagagatgccatcctcaattacatatattaatggataattgctagggtgaggaagtgtctcatgtg |
200 |
Q |
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| T |
48597331 |
atggttggggagagttctcaaagactcgttgggtaagagatgccatcctcaattacatatattaatggataattgctagggtgaggaagtgtctcatgtg |
48597232 |
T |
|
| Q |
201 |
gtcgacagtagactgatgcttgaaaactgctccaaacttcgacagcgaaggatgtcaccccctttaagtagagttcagaatcattcat |
288 |
Q |
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| T |
48597231 |
gtcgacagtagactgatgcttgaaagctgctccaaacttcgacagcgaaggatgtcaccccctttaagtagagttcagaatcattcat |
48597144 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 7620574 - 7620704
Alignment:
| Q |
37 |
cagccattaacggtggcacttgtgtatgctggaacaacgctcaaagatatatctgatgtgacacatggttggggagagttctcaaagactcgttgggtaa |
136 |
Q |
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|||||| |||| |||||||||| |||| |||||| || || |||||| | ||||| || |||||||||||| || ||||| ||| ||||||||||| |
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| T |
7620574 |
cagccaataacactggcacttgtatatgttggaacgacccttaaagatctttctgacgtaacacatggttggaatgaattctcgaagtctcgttgggtat |
7620673 |
T |
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| Q |
137 |
gagatgccatcctcaattacatatattaatg |
167 |
Q |
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| T |
7620674 |
gagatactatcgtcaattagatatactaatg |
7620704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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