View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_54 (Length: 295)
Name: NF1910_low_54
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 28255521 - 28255436
Alignment:
| Q |
197 |
ttgaaaacttaaaaagccgaatggatcagaaagggaatatttgtcacaagagatttgaaaaattccttataagatcaacaattggt |
282 |
Q |
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| T |
28255521 |
ttgaaaacttaaaaggccgaatggatcagaaagggaatatttgtcacaagagatttgaaaaattccttataagatcaacaattggt |
28255436 |
T |
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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 28255764 - 28255730
Alignment:
| Q |
111 |
attttgcttttgcagaatctatatttttagtctta |
145 |
Q |
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| T |
28255764 |
attttgcttttgcagaaactatatttttagtctta |
28255730 |
T |
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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 2871713 - 2871654
Alignment:
| Q |
4 |
aggcacatcttgtgtgttgggaactacccttatttatatataattccattttggtttgtt |
63 |
Q |
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| T |
2871713 |
aggcacatcttgtgcgttgggaactacccttattcgtatataattccattttggcttgtt |
2871654 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 28326877 - 28326819
Alignment:
| Q |
4 |
aggcacatcttgtgtgttgggaactacccttatttatatataattccattttggtttgtt |
63 |
Q |
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| T |
28326877 |
aggcacaccttgtgcgttgggaactaccc-tattcgtatataattccattttggcttgtt |
28326819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 20673231 - 20673171
Alignment:
| Q |
3 |
taggcacatcttgtgtgttgggaactacccttatttatatataattccattttggtttgtt |
63 |
Q |
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| T |
20673231 |
taggcacaccttgtgcgtttggaactaccctatttcgtatataattccattttggcttgtt |
20673171 |
T |
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