View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_55 (Length: 287)
Name: NF1910_low_55
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_55 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 39906697 - 39906971
Alignment:
| Q |
13 |
aacctgtgtaaacctgctatcatcaatgttgaagaatgatatgatacctcgttttattgattttccatattttgaatctatcgaggatgtgtttcggttg |
112 |
Q |
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| T |
39906697 |
aacctgtgtaaacctgctatcatcgatgttgaagaatgatatgatacctcgttttattgattttccatattttgaatctatcgaggatgtgtttcggttg |
39906796 |
T |
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| Q |
113 |
gatgaggataggttaaggtcatatccgcacgaaccgcagctgtaataaacatagtacatatataaattatgaaatacgtaaatcatgcatgatcggagga |
212 |
Q |
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| T |
39906797 |
gatgaggataggttaaggtcatatccgcacgaaccgcagctgtaaaaaacatagtacatatataaattatgaaatacgtaaatcatgcatgatcagggga |
39906896 |
T |
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| Q |
213 |
attaagtaattcttgaagtaaataatgtgatggtatgatatgaacaatcatgatcacagaaatactagaaaatcc |
287 |
Q |
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| T |
39906897 |
attaagtaattcttgaagtaaataatgtgatggtatgatatgaacaatcatgatcacagaaatactagaaaatcc |
39906971 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 10476109 - 10476035
Alignment:
| Q |
13 |
aacctgtgtaaacctgctatcatcaatgttgaagaatgatatgatacctcgttttattgattttccatattttga |
87 |
Q |
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|||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||||| || || || |||||||| |
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| T |
10476109 |
aacctgggtaaatctgctatcatcaatattgaaaaatgatatgatacctcgctttatggacttcccgtattttga |
10476035 |
T |
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