View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_56 (Length: 273)
Name: NF1910_low_56
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 112597 - 112354
Alignment:
| Q |
19 |
agttgttggtgaatattctagtgatgctctttctccgcttgttgtaagtaatccttatgaggctaagtttttagaactggttcaagtcgcatgtggcgcg |
118 |
Q |
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| T |
112597 |
agttgttggtgaatattctagtgatgctctttctccgcttgttgtaagtaatccttatgaggctaagtttttagaaccggttcaagtcgcatgtggcgcg |
112498 |
T |
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| Q |
119 |
gctcatactattattgttgctcaagagggatataaagtttggtctttgggaagaggaagaagtggtgttcttggaaatggtaatgtagtagattgttaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
112497 |
gctcatactattattgttgctcaagagggatataaagtttggtctttgggaagaggaagaagtggtgttcttggaaatggtaatgtagtagattgttaca |
112398 |
T |
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| Q |
219 |
ttcccactttagtgttatggcctccactggtggaagattttcat |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
112397 |
ttcccactttagtgttatggcctccactggtggaagattttcat |
112354 |
T |
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