View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_63 (Length: 256)
Name: NF1910_low_63
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 6811554 - 6811327
Alignment:
| Q |
1 |
gatggagtaaaatttgaagttgatagtcttgaaattaatgattgtagcatagactttgaggcggattaatccaaatgtatatcattaagaaactaaacac |
100 |
Q |
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| T |
6811554 |
gatggagtaaaagttgaagttgatagtcttgaaattaatgattgtagtatagactttgaggcggattaattcaaatgtatatcattaagaaactaaacac |
6811455 |
T |
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| Q |
101 |
nnnnnnnnnnnnnnnnatgattttttgatataatgtaagtttcttaaatcaacaaagacacaaaaacattttatgtgattttctcaactcagaggagatt |
200 |
Q |
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| T |
6811454 |
atattatatatata--atgattttttgatataatgtaagtttgttaaatcaacaaagacacaaaaacattttatgtgattttctcaactcagaggagatt |
6811357 |
T |
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| Q |
201 |
cggattatgtaataccaaaatctgaaaaaa |
230 |
Q |
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| T |
6811356 |
cggattatgtaataccaaaatctgaaaaaa |
6811327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 41060959 - 41060867
Alignment:
| Q |
7 |
gtaaaatttgaagttgatagtcttgaaattaatgattgtagcatagactttgaggcggattaatccaaatgtatatcattaagaaactaaacac |
100 |
Q |
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| T |
41060959 |
gtaaaagttgaagataatagtcttgaa-ttgaggattgtagcatagacgttggtgcagattagttcaaatgtatatcattaaggaactaaacac |
41060867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 21545472 - 21545544
Alignment:
| Q |
16 |
gaagttgatagtcttgaaattaatgattgtagcatagactttgaggcggattaatccaaatgtatatcattaa |
88 |
Q |
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| T |
21545472 |
gaagatgaaagtcttggactttatgattgtagtatagaccttgaagcggattagttgaaatgtatatcattaa |
21545544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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