View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1910_low_64 (Length: 255)

Name: NF1910_low_64
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1910_low_64
NF1910_low_64
[»] chr7 (13 HSPs)
chr7 (72-136)||(38233776-38233840)
chr7 (77-139)||(42113004-42113066)
chr7 (72-139)||(17884234-17884299)
chr7 (77-137)||(23551633-23551693)
chr7 (77-141)||(42622333-42622397)
chr7 (77-139)||(15748994-15749057)
chr7 (77-139)||(45940445-45940508)
chr7 (68-132)||(13697262-13697327)
chr7 (20-65)||(19422956-19423001)
chr7 (20-65)||(27949286-27949331)
chr7 (77-138)||(32820276-32820337)
chr7 (72-127)||(42253943-42253999)
chr7 (99-135)||(42267074-42267110)
[»] chr5 (11 HSPs)
chr5 (68-141)||(10843015-10843089)
chr5 (72-141)||(43496901-43496970)
chr5 (68-127)||(29022604-29022663)
chr5 (25-65)||(17537229-17537269)
chr5 (77-139)||(35683518-35683581)
chr5 (72-141)||(5772760-5772830)
chr5 (75-141)||(22103488-22103553)
chr5 (75-127)||(5836873-5836926)
chr5 (72-141)||(19389858-19389927)
chr5 (72-139)||(10437959-10438027)
chr5 (72-139)||(39649544-39649612)
[»] chr4 (19 HSPs)
chr4 (72-141)||(8827860-8827929)
chr4 (78-139)||(44076577-44076638)
chr4 (72-172)||(46176967-46177068)
chr4 (77-135)||(11976814-11976873)
chr4 (20-63)||(50571879-50571922)
chr4 (72-156)||(38136874-38136959)
chr4 (72-139)||(12708874-12708942)
chr4 (72-139)||(29114273-29114341)
chr4 (72-139)||(30198811-30198879)
chr4 (72-139)||(35959169-35959237)
chr4 (99-138)||(25843818-25843857)
chr4 (23-65)||(39016791-39016833)
chr4 (72-137)||(45823530-45823596)
chr4 (86-127)||(8828252-8828293)
chr4 (20-65)||(40991711-40991756)
chr4 (20-65)||(43771139-43771184)
chr4 (25-65)||(8108969-8109009)
chr4 (21-61)||(20454557-20454597)
chr4 (25-65)||(50164408-50164448)
[»] chr2 (17 HSPs)
chr2 (77-141)||(15555391-15555456)
chr2 (86-137)||(11949881-11949932)
chr2 (72-141)||(43572584-43572654)
chr2 (80-141)||(35550206-35550267)
chr2 (72-139)||(1364806-1364874)
chr2 (99-139)||(4003401-4003441)
chr2 (72-139)||(11515017-11515085)
chr2 (25-65)||(18511336-18511376)
chr2 (72-139)||(37194240-37194308)
chr2 (86-136)||(7367590-7367641)
chr2 (78-134)||(21834919-21834976)
chr2 (72-137)||(30523222-30523287)
chr2 (100-137)||(41656711-41656748)
chr2 (20-65)||(45554580-45554625)
chr2 (78-142)||(3737272-3737336)
chr2 (72-127)||(34757590-34757646)
chr2 (77-141)||(39819869-39819933)
[»] chr6 (5 HSPs)
chr6 (72-127)||(22788558-22788613)
chr6 (68-138)||(33212306-33212376)
chr6 (72-141)||(32719416-32719486)
chr6 (77-139)||(1567254-1567317)
chr6 (77-139)||(33590373-33590435)
[»] chr8 (11 HSPs)
chr8 (79-139)||(4166689-4166750)
chr8 (72-139)||(43007691-43007759)
chr8 (77-127)||(22330676-22330726)
chr8 (72-141)||(23932598-23932668)
chr8 (72-127)||(42651632-42651687)
chr8 (86-137)||(44251612-44251663)
chr8 (84-141)||(13227681-13227739)
chr8 (72-141)||(21173898-21173968)
chr8 (78-147)||(43438340-43438409)
chr8 (79-139)||(31149886-31149946)
chr8 (72-139)||(39193904-39193972)
[»] scaffold0031 (1 HSPs)
scaffold0031 (72-139)||(93546-93614)
[»] chr1 (10 HSPs)
chr1 (72-139)||(52068177-52068245)
chr1 (72-135)||(42333622-42333685)
chr1 (72-141)||(29092057-29092127)
chr1 (20-65)||(25543353-25543398)
chr1 (72-139)||(5584478-5584546)
chr1 (76-139)||(69707-69770)
chr1 (77-139)||(17760520-17760583)
chr1 (78-127)||(40243356-40243406)
chr1 (72-141)||(41817339-41817409)
chr1 (72-139)||(36269716-36269784)
[»] chr3 (15 HSPs)
chr3 (86-141)||(27197223-27197278)
chr3 (86-136)||(30995846-30995896)
chr3 (72-141)||(33944680-33944750)
chr3 (72-153)||(38639548-38639630)
chr3 (77-127)||(54089499-54089549)
chr3 (72-136)||(29623213-29623277)
chr3 (21-65)||(50661645-50661689)
chr3 (20-63)||(26310568-26310611)
chr3 (77-139)||(37674185-37674248)
chr3 (72-138)||(53664639-53664706)
chr3 (72-141)||(1132965-1133035)
chr3 (72-141)||(49855848-49855918)
chr3 (20-65)||(28529266-28529311)
chr3 (72-127)||(25754142-25754198)
chr3 (72-127)||(33908989-33909045)
[»] scaffold0248 (1 HSPs)
scaffold0248 (72-141)||(236-306)
[»] scaffold0136 (1 HSPs)
scaffold0136 (72-141)||(2063-2133)
[»] scaffold0051 (2 HSPs)
scaffold0051 (87-137)||(746-796)
scaffold0051 (87-137)||(3623-3673)


Alignment Details
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 38233776 - 38233840
Alignment:
Q  72 tccttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacc 136  Q
    |||||||||||||||||||||||||| |||||||||| |||||||| ||| ||||| ||||||||    
T  38233776 tccttcaatacaactttttagttcctcaaatgagaagggttttgtaatatcaagaaaaattaacc 38233840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 42113004 - 42113066
Alignment:
Q  77 caatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    ||||||||||||||||||||  ||||||| ||||||| ||||||||||||| |||||||||||    
T  42113004 caatacaactttttagttccccaaatgaggagagtttagtattatgaagaaaaattaaccccc 42113066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 17884234 - 17884299
Alignment:
Q  72 tccttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||| |||||||||||| |||| |||||  ||||||||||||||||| |||||||||||    
T  17884234 tcctccaatacaattttttagttcctcaaataagaag--ttttgtattatgaagaaaaattaaccccc 17884299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 23551693 - 23551633
Alignment:
Q  77 caatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaaccc 137  Q
    ||||||||| |||||||||| |||||||| || | |||||||||||||||| || ||||||    
T  23551693 caatacaaccttttagttcccaaaatgaggagggctttgtattatgaagaaaaactaaccc 23551633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 42622397 - 42622333
Alignment:
Q  77 caatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    ||||||||||||||||||||  |||||||||   |||||||| ||||||||  ||||||||||||    
T  42622397 caatacaactttttagttccctaaatgagaatgattttgtatgatgaagaaatattaacccccaa 42622333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 15748994 - 15749057
Alignment:
Q  77 caatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||    
T  15748994 caatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccc 15749057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 45940445 - 45940508
Alignment:
Q  77 caatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||    
T  45940445 caatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccc 45940508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 13697327 - 13697262
Alignment:
Q  68 accgtccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaatt 132  Q
    |||||| | ||||||||||||||||||||   ||||||| || |||||||||||||||||| ||||    
T  13697327 accgtcttccaatacaactttttagttcccccaaatgaggagggttttgtattatgaagaaaaatt 13697262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 19422956 - 19423001
Alignment:
Q  20 catctaataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    |||| ||| ||||||| |||||||||||||||||| ||||||||||    
T  19422956 catccaatgaaagagtgagtgatagagagagtgttgaaaagtgagt 19423001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 27949331 - 27949286
Alignment:
Q  20 catctaataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    |||| |||| |||||| |||| ||||||||||||||||||||||||    
T  27949331 catccaatacaagagtgagtgttagagagagtgttaaaaagtgagt 27949286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 32820276 - 32820337
Alignment:
Q  77 caatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacccc 138  Q
    ||||||||||||||||||||  ||| ||| | | |||||||||| |||||| ||||||||||    
T  32820276 caatacaactttttagttccccaaacgaggataattttgtattaggaagaaaaattaacccc 32820337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 42253999 - 42253943
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaa 127  Q
    |||||||||| || ||||||||||||  ||||||| || ||||||||||||||||||    
T  42253999 tccttcaatataattttttagttcctccaaatgaggagggttttgtattatgaagaa 42253943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 42267074 - 42267110
Alignment:
Q  99 aaatgagaagagttttgtattatgaagaagaattaac 135  Q
    |||||| |||||||||||||||||||||| |||||||    
T  42267074 aaatgataagagttttgtattatgaagaaaaattaac 42267110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 10843089 - 10843015
Alignment:
Q  68 accgtccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    ||||||||||||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||||    
T  10843089 accgtccttcaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaacccccaa 10843015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 43496901 - 43496970
Alignment:
Q  72 tccttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| |||||||| |||| ||||||  ||||||| ||||||||||||||| ||||| |||||||||||||    
T  43496901 tcctccaatacaatttttaagttccccaaatgagcagagttttgtattattaagaaaaattaacccccaa 43496970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 29022663 - 29022604
Alignment:
Q  68 accgtccttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaa 127  Q
    |||||||| |||||||| |||||||||||| ||||||| |||||||| |||| |||||||    
T  29022663 accgtcctccaatacaattttttagttccttaaatgaggagagttttatattttgaagaa 29022604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 17537229 - 17537269
Alignment:
Q  25 aataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  17537229 aataaaagagtgagtgatagagagagtgttgaaaagtgagt 17537269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 35683518 - 35683581
Alignment:
Q  77 caatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||    
T  35683518 caatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccc 35683581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 5772760 - 5772830
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| |||||||| |||||| |||||  ||||||| || |||||||||||||||||| | |||||||||||    
T  5772760 tcctccaatacaattttttaattcctccaaatgaggagggttttgtattatgaagaaaagttaacccccaa 5772830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 22103553 - 22103488
Alignment:
Q  75 ttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||||||||| |||||||||||   |||||  || |||||||||||||||||| |||||||||||||    
T  22103553 ttcaatacaa-tttttagttccccgaatgatgagggttttgtattatgaagaaaaattaacccccaa 22103488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 5836926 - 5836873
Alignment:
Q  75 ttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaa 127  Q
    |||||||||| |||| ||||||   |||||||||||||||||||||||||||||    
T  5836926 ttcaatacaatttttaagttcccccaaatgagaagagttttgtattatgaagaa 5836873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 19389858 - 19389927
Alignment:
Q  72 tccttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| |||||||| |||||||||||  ||||||| ||  ||||||||||||||||  ||| |||||||||    
T  19389858 tcctccaatacaattttttagttccccaaatgaggaggattttgtattatgaagataaatgaacccccaa 19389927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 10438027 - 10437959
Alignment:
Q  72 tccttcaatacaactttttagttcct-aaaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||||||||||||||||  ||||||| ||  ||||||||||| ||||| | |||||||||    
T  10438027 tcctccaatacaactttttagttcctctaaatgaggaggattttgtattataaagaaaagttaaccccc 10437959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 39649612 - 39649544
Alignment:
Q  72 tccttcaatacaactttttagttcct-aaaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||| ||||||||||||  ||||||| || ||||||||| |||||||| | |||||||||    
T  39649612 tcctccaatacaattttttagttcctccaaatgaggagggttttgtatcatgaagaaaagttaaccccc 39649544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 8827860 - 8827929
Alignment:
Q  72 tccttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    ||||| ||||||||||||||||| |  ||||||| ||||||||||||||||||||| ||||||| |||||    
T  8827860 tccttgaatacaactttttagtttcccaaatgaggagagttttgtattatgaagaataattaactcccaa 8827929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 44076638 - 44076577
Alignment:
Q  78 aatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    ||||||| |||||||||||  || |||||||||||||||||||||||||| |||||| ||||    
T  44076638 aatacaattttttagttccctaagtgagaagagttttgtattatgaagaaaaattaatcccc 44076577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 46176967 - 46177068
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaataaccatcctcttcccatgttccctattt 170  Q
    |||| |||||||||||||||||||||  ||||||| || |||||||||||| ||||| ||||||||||| | |||| ||| || || |||| | ||||||    
T  46176967 tcctccaatacaactttttagttcctccaaatgaggagggttttgtattattaagaaaaattaaccccccaaaaccctcccctcccaatgtactctattt 46177066  T
Q  171 ct 172  Q
    ||    
T  46177067 ct 46177068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 11976873 - 11976814
Alignment:
Q  77 caatacaactttttagttcc-taaaatgagaagagttttgtattatgaagaagaattaac 135  Q
    |||||||||||||||||||| | |||||||||  |||||||||||||||||| |||||||    
T  11976873 caatacaactttttagttcccttaaatgagaaatgttttgtattatgaagaaaaattaac 11976814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 50571922 - 50571879
Alignment:
Q  20 catctaataaaagagtaagtgatagagagagtgttaaaaagtga 63  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||    
T  50571922 catctaataaaagagtaagtgctagagagagtgttgaaaagtga 50571879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 38136874 - 38136959
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaataaccatcctcttcc 156  Q
    |||| |||||||| ||||||||||||  |||||||||| ||||||||||||||| || | ||||||||| | | || |||||||||    
T  38136874 tcctccaatacaattttttagttcctccaaatgagaagggttttgtattatgaaaaaaagttaaccccccaaagccctcctcttcc 38136959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 12708874 - 12708942
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||    
T  12708874 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccc 12708942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 29114273 - 29114341
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||    
T  29114273 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccc 29114341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 30198811 - 30198879
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||    
T  30198811 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccc 30198879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 35959237 - 35959169
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| ||||||||||||||||||||   ||||||| || |||||||||||||||||| |||||| ||||    
T  35959237 tcctccaatacaactttttagttcccccaaatgaggagggttttgtattatgaagaaaaattaaacccc 35959169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 25843857 - 25843818
Alignment:
Q  99 aaatgagaagagttttgtattatgaagaagaattaacccc 138  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  25843857 aaatgagaagagttttgtattatgatgaaaaattaacccc 25843818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 39016791 - 39016833
Alignment:
Q  23 ctaataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||    
T  39016791 ctaataaaagagtaagtgctagagagagtgttcaaaagagagt 39016833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 45823596 - 45823530
Alignment:
Q  72 tccttcaatacaactttttagtt-cctaaaatgagaagagttttgtattatgaagaagaattaaccc 137  Q
    ||||||||||||| |||| |||| ||  ||||||| ||||||||||||||||||||| | |||||||    
T  45823596 tccttcaatacaatttttaagtttccccaaatgaggagagttttgtattatgaagaaaagttaaccc 45823530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 8828252 - 8828293
Alignment:
Q  86 tttttagttcctaaaatgagaagagttttgtattatgaagaa 127  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  8828252 ttttcagttcctcaaatgaggagagttttgtattatgaagaa 8828293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 40991711 - 40991756
Alignment:
Q  20 catctaataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    |||| ||| ||||||| |||||||||||||||||| ||||||||||    
T  40991711 catccaatgaaagagtgagtgatagagagagtgttgaaaagtgagt 40991756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 43771184 - 43771139
Alignment:
Q  20 catctaataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    |||| ||||||||||| ||| |||||||||||||| ||||||||||    
T  43771184 catccaataaaagagtgagtcatagagagagtgttcaaaagtgagt 43771139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 8109009 - 8108969
Alignment:
Q  25 aataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    ||||||||||| |||| ||||||||||||| ||||||||||    
T  8109009 aataaaagagtgagtgctagagagagtgttgaaaagtgagt 8108969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 20454597 - 20454557
Alignment:
Q  21 atctaataaaagagtaagtgatagagagagtgttaaaaagt 61  Q
    ||||||||||||||| |||| ||||||||||||| ||||||    
T  20454597 atctaataaaagagtgagtgctagagagagtgttgaaaagt 20454557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 50164448 - 50164408
Alignment:
Q  25 aataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    |||||| |||| |||| ||||||||||||||||||||||||    
T  50164448 aataaatgagtgagtgctagagagagtgttaaaaagtgagt 50164408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 15555391 - 15555456
Alignment:
Q  77 caatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||||||| ||||||||||||  |||||||||| |||||||||||||||||| |||||||||||||    
T  15555391 caatacaattttttagttcctccaaatgagaagggttttgtattatgaagaaaaattaacccccaa 15555456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 11949932 - 11949881
Alignment:
Q  86 tttttagttcctaaaatgagaagagttttgtattatgaagaagaattaaccc 137  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||| |||||    
T  11949932 tttttagttccccaaatgagaagagttttgtattatgaagaaaaataaaccc 11949881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 43572584 - 43572654
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||||    
T  43572584 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaacccccaa 43572654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 35550206 - 35550267
Alignment:
Q  80 tacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||||||||||||||||  ||||||| || |||| ||||||||||||| | |||||||||||    
T  35550206 tacaactttttagttccccaaatgaggagggtttagtattatgaagaacagttaacccccaa 35550267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 1364874 - 1364806
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||    
T  1364874 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccc 1364806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 4003441 - 4003401
Alignment:
Q  99 aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  4003441 aaatgaggagagttttgtattatgaagaaaaattaaccccc 4003401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 11515085 - 11515017
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||    
T  11515085 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccc 11515017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 18511336 - 18511376
Alignment:
Q  25 aataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  18511336 aataaaagagtgagtgatagtgagagtgttaaaaagtgagt 18511376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 37194308 - 37194240
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||    
T  37194308 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccc 37194240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 7367641 - 7367590
Alignment:
Q  86 tttttagttcc-taaaatgagaagagttttgtattatgaagaagaattaacc 136  Q
    ||||||||||| |||||||||||||||||||||| |||||| | ||||||||    
T  7367641 tttttagttccctaaaatgagaagagttttgtataatgaagcaaaattaacc 7367590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 21834976 - 21834919
Alignment:
Q  78 aatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaa 134  Q
    |||||||||||||||||||   ||||||| |||||||| |||||||||||| ||||||    
T  21834976 aatacaactttttagttcccctaaatgaggagagttttatattatgaagaaaaattaa 21834919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 30523287 - 30523222
Alignment:
Q  72 tccttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaaccc 137  Q
    |||| |||||||| |||||||||||  |||| |||||  ||||||||||||||||| | |||||||    
T  30523287 tcctccaatacaattttttagttccccaaattagaaggattttgtattatgaagaaaatttaaccc 30523222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 41656711 - 41656748
Alignment:
Q  100 aatgagaagagttttgtattatgaagaagaattaaccc 137  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  41656711 aatgaggagagttttgtattatgaagaaaaattaaccc 41656748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 45554625 - 45554580
Alignment:
Q  20 catctaataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    |||| ||||||||||| |||| ||||||||||||| ||||||||||    
T  45554625 catccaataaaagagtgagtgctagagagagtgttgaaaagtgagt 45554580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 3737272 - 3737336
Alignment:
Q  78 aatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacccccaat 142  Q
    ||||||| |||| ||||| | ||||||| |   ||||||||||||||||| ||||||||||||||    
T  3737272 aatacaatttttgagttcttcaaatgaggatgattttgtattatgaagaaaaattaacccccaat 3737336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 34757646 - 34757590
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaa 127  Q
    |||| |||||||| ||||||||||||  ||||||| || ||||||||||||||||||    
T  34757646 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaa 34757590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 39819933 - 39819869
Alignment:
Q  77 caatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||||||| |||||||||||  ||||||| ||  |||||||||| |||||| ||| |||||||||    
T  39819933 caatacaattttttagttccccaaatgaggaggattttgtattaggaagaaaaatgaacccccaa 39819869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 22788558 - 22788613
Alignment:
Q  72 tccttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaa 127  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||||||| |||||    
T  22788558 tcctccaatacaattttttagttcctcaaatgagaagagttttgtattatcaagaa 22788613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 33212376 - 33212306
Alignment:
Q  68 accgtccttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacccc 138  Q
    |||||| | ||||||||||||||||||||  ||||||| ||||| ||||||||||||||  ||||||||||    
T  33212376 accgtcatccaatacaactttttagttccccaaatgagcagagtgttgtattatgaagacaaattaacccc 33212306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 32719416 - 32719486
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||||    
T  32719416 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaacccccaa 32719486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 1567317 - 1567254
Alignment:
Q  77 caatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||    
T  1567317 caatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccc 1567254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 33590373 - 33590435
Alignment:
Q  77 caatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||||||| ||||||| |||  ||||||| || |||||||||||||||||| | |||||||||    
T  33590373 caatacaattttttagctccccaaatgaggagggttttgtattatgaagaaaagttaaccccc 33590435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 4166689 - 4166750
Alignment:
Q  79 atacaactttttagttcctaa-aatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||| |||| ||||||    
T  4166689 atacaactttttagttccttcgaatgagaagagttttgtattatgaagaaaaatttaccccc 4166750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 43007759 - 43007691
Alignment:
Q  72 tccttcaatacaactttttagtt-cctaaaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    ||||||||||||| ||||||||| || |||||||| ||||||||||||||| ||||| | |||||||||    
T  43007759 tccttcaatacaattttttagtttcccaaaatgaggagagttttgtattataaagaaaagttaaccccc 43007691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 22330726 - 22330676
Alignment:
Q  77 caatacaactttttagttcctaaaatgagaagagttttgtattatgaagaa 127  Q
    |||||||| |||||||||||||||| ||| ||| |||||||||||||||||    
T  22330726 caatacaattttttagttcctaaaaagaggagaattttgtattatgaagaa 22330676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 23932598 - 23932668
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||||    
T  23932598 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaacccccaa 23932668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 42651687 - 42651632
Alignment:
Q  72 tccttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaa 127  Q
    |||| ||||||||||||||| |||| |||||||| | | |||||||||||||||||    
T  42651687 tcctacaatacaactttttaattcccaaaatgaggaaaattttgtattatgaagaa 42651632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 44251612 - 44251663
Alignment:
Q  86 tttttagttcctaaaatgagaagagttttgtattatgaagaagaattaaccc 137  Q
    |||||||||||| ||||||||||| ||| ||||||||||||| | |||||||    
T  44251612 tttttagttcctcaaatgagaagaatttagtattatgaagaaaagttaaccc 44251663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 13227739 - 13227681
Alignment:
Q  84 actttttagtt-cctaaaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    ||||||||||| ||| ||||||| |||||||||||| |||||||| | |||||||||||    
T  13227739 actttttagtttcctcaaatgaggagagttttgtataatgaagaaaagttaacccccaa 13227681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 21173898 - 21173968
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| ||||| || ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||||    
T  21173898 tcctccaatataattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaacccccaa 21173968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 43438340 - 43438409
Alignment:
Q  78 aatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacccccaataacca 147  Q
    ||||||| |||| ||||||| ||||| ||||| ||||||||||| ||||| ||| |||| |||| |||||    
T  43438340 aatacaatttttgagttcctcaaatgggaagaattttgtattataaagaaaaatgaacctccaaaaacca 43438409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 31149946 - 31149886
Alignment:
Q  79 atacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    ||||||||||||||||||  ||||||| |   |||||||||| |||||| |||||||||||    
T  31149946 atacaactttttagttccccaaatgaggatgattttgtattaggaagaaaaattaaccccc 31149886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 39193972 - 39193904
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| ||||||||||||||||||||   ||||||  || ||||| |||||||||||| |||||||||||    
T  39193972 tcctccaatacaactttttagttcccccaaatgaagagggttttatattatgaagaaaaattaaccccc 39193904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 93546 - 93614
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||| ||||||||||||  ||||||| ||||||||||||||||||||| | |||||||||    
T  93546 tcctccaatacaattttttagttcctccaaatgaggagagttttgtattatgaagaaaagttaaccccc 93614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 52068177 - 52068245
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||| ||||||||||||  ||||||| ||||||||||||||||||||| | |||||||||    
T  52068177 tcctccaatacaattttttagttcctccaaatgaggagagttttgtattatgaagaaaagttaaccccc 52068245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 42333685 - 42333622
Alignment:
Q  72 tccttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaac 135  Q
    |||| |||||||||| |||||||||  ||||||| || |||||||||||||||||| |||||||    
T  42333685 tcctccaatacaactctttagttccctaaatgaggagggttttgtattatgaagaaaaattaac 42333622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 29092127 - 29092057
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||||    
T  29092127 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaacccccaa 29092057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 25543398 - 25543353
Alignment:
Q  20 catctaataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||    
T  25543398 catcaaataaaagagtaagtgttagagagagtgtttaaaagtgagt 25543353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 5584546 - 5584478
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||    
T  5584546 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccc 5584478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 69770 - 69707
Alignment:
Q  76 tcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    ||||||||| |||||||||||| ||| ||| || |||| ||||||||||||| | |||||||||    
T  69770 tcaatacaattttttagttcctcaaacgaggagggtttagtattatgaagaaaagttaaccccc 69707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 17760520 - 17760583
Alignment:
Q  77 caatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||    
T  17760520 caatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccc 17760583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 40243406 - 40243356
Alignment:
Q  78 aatacaactttttagttc-ctaaaatgagaagagttttgtattatgaagaa 127  Q
    |||| ||||||||||||| | ||||||||||| ||||||||||||||||||    
T  40243406 aatataactttttagttctccaaaatgagaagggttttgtattatgaagaa 40243356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 41817339 - 41817409
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| |||||||| ||||||||||||  ||||||  || |||||||||||||||||| | |||||||||||    
T  41817339 tcctccaatacaattttttagttcctccaaatgatgagggttttgtattatgaagaaaagttaacccccaa 41817409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 36269784 - 36269716
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||| |||||||| |||||||||||   ||||||| || |||||||||||||||||| | |||||||||    
T  36269784 tcctccaatacaattttttagttcccccaaatgaggagggttttgtattatgaagaaaagttaaccccc 36269716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 27197278 - 27197223
Alignment:
Q  86 tttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||||||||||| ||||||| || |||||||||||||||||| | |||||||||||    
T  27197278 tttttagttcctcaaatgaggagggttttgtattatgaagaatagttaacccccaa 27197223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 30995896 - 30995846
Alignment:
Q  86 tttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacc 136  Q
    |||||||||||  ||||||| ||||||||||||||||||||| ||||||||    
T  30995896 tttttagttccccaaatgagtagagttttgtattatgaagaaaaattaacc 30995846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 33944680 - 33944750
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | |||||||||||    
T  33944680 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaacccccaa 33944750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 38639630 - 38639548
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaataaccatcctct 153  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | ||||||||| | |||| ||||||    
T  38639630 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccccaaaaccttcctct 38639548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 54089499 - 54089549
Alignment:
Q  77 caatacaactttttagttcctaaaatgagaagagttttgtattatgaagaa 127  Q
    |||||||| ||||||||| || ||||||||||||||||||||||| |||||    
T  54089499 caatacaattttttagtttctcaaatgagaagagttttgtattataaagaa 54089549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 29623277 - 29623213
Alignment:
Q  72 tccttcaatacaactttttagttcctaaaatgagaagagttttgtattatgaagaagaattaacc 136  Q
    |||| ||||||||||||| |||| |  ||||||| || |||||||||||||||||| ||||||||    
T  29623277 tcctgcaatacaacttttgagtttcccaaatgaggagggttttgtattatgaagaaaaattaacc 29623213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 50661645 - 50661689
Alignment:
Q  21 atctaataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||    
T  50661645 atctaataaaagagtaagtgttagagagagtgtttaaaagagagt 50661689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 26310568 - 26310611
Alignment:
Q  20 catctaataaaagagtaagtgatagagagagtgttaaaaagtga 63  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||    
T  26310568 catccaataaaagagtaagtgctagagagagtgttgaaaagtga 26310611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 37674185 - 37674248
Alignment:
Q  77 caatacaactttttagttcct-aaaatgagaagagttttgtattatgaagaagaattaaccccc 139  Q
    |||||||| |||||||||||| |||||||| || ||||||||| |||||||| | |||||||||    
T  37674185 caatacaattttttagttcctcaaaatgaggagggttttgtatcatgaagaaaagttaaccccc 37674248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 53664639 - 53664706
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccc 138  Q
    |||| |||||||| ||||||||||||  ||||||| || |||||||||||||||||| | ||||||||    
T  53664639 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaacccc 53664706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 1132965 - 1133035
Alignment:
Q  72 tccttcaatacaactttttagttcct-aaaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| |||||||| |||| ||||||  |||||||| ||||||||||||||||||| | ||| |||||||||    
T  1132965 tcctccaatacaatttttgagttccccaaaatgaggagagttttgtattatgaagtaaaatgaacccccaa 1133035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 49855848 - 49855918
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    ||||||||||||| |||| |||||||  |||||||||   ||||||||||||||||| ||| |||||||||    
T  49855848 tccttcaatacaatttttgagttcctctaaatgagaattattttgtattatgaagaaaaatgaacccccaa 49855918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 28529311 - 28529266
Alignment:
Q  20 catctaataaaagagtaagtgatagagagagtgttaaaaagtgagt 65  Q
    |||| ||||||||||| |||| ||||||||||||| ||||||||||    
T  28529311 catccaataaaagagtgagtgctagagagagtgttgaaaagtgagt 28529266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 25754142 - 25754198
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaa 127  Q
    |||| |||||||| ||||||||||||  ||||||| || ||||||||||||||||||    
T  25754142 tcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaa 25754198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 33908989 - 33909045
Alignment:
Q  72 tccttcaatacaactttttagtt-cctaaaatgagaagagttttgtattatgaagaa 127  Q
    |||| |||||||||||||||||| ||  ||||||| || ||||||||||||||||||    
T  33908989 tcctccaatacaactttttagtttccccaaatgaggagggttttgtattatgaagaa 33909045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 236 - 306
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| |||||||| ||||||||||||  |||| || || |||||||||||||||||| | |||||||||||    
T  236 tcctccaatacaattttttagttcctccaaataaggagggttttgtattatgaagaaaagttaacccccaa 306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 2063 - 2133
Alignment:
Q  72 tccttcaatacaactttttagttccta-aaatgagaagagttttgtattatgaagaagaattaacccccaa 141  Q
    |||| |||||||| |||| |||||||  ||||||| || |||||||||||||||||| | |||||||||||    
T  2063 tcctccaatacaatttttcagttcctccaaatgaggagggttttgtattatgaagaaaagttaacccccaa 2133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 746 - 796
Alignment:
Q  87 ttttagttcctaaaatgagaagagttttgtattatgaagaagaattaaccc 137  Q
    ||||||||||| ||||||| || |||||||||||||||||| | |||||||    
T  746 ttttagttcctcaaatgaggagggttttgtattatgaagaaaagttaaccc 796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 3623 - 3673
Alignment:
Q  87 ttttagttcctaaaatgagaagagttttgtattatgaagaagaattaaccc 137  Q
    ||||||||||| ||||||| || |||||||||||||||||| | |||||||    
T  3623 ttttagttcctcaaatgaggagggttttgtattatgaagaaaagttaaccc 3673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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