View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_65 (Length: 254)
Name: NF1910_low_65
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 24543376 - 24543540
Alignment:
| Q |
1 |
accacaagtttacaagaaaccagtaaatgaaaaacccaaacaccatattcgatgggaaggtacattgtactc--atgtattgattttttatgcatctaac |
98 |
Q |
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| T |
24543376 |
accacaagtttacaagaaaccagtaaatgaaaaacccaaacaccatattcgatgggaaggtacattgtactctcatgtattgattttttatgcatctaac |
24543475 |
T |
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| Q |
99 |
tccttttaagtgaataactcactttaattatagttcaaagtaaatattatcaaccattgattaac |
163 |
Q |
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| T |
24543476 |
tccttttaagtgaataactcactttaattatagttcaaagtaaatattatcaaccattgattaac |
24543540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 24543541 - 24543595
Alignment:
| Q |
143 |
tattatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataac |
197 |
Q |
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| T |
24543541 |
tattatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataac |
24543595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 24543623 - 24543651
Alignment:
| Q |
210 |
tcttaacattattttctccaacaggcatt |
238 |
Q |
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| T |
24543623 |
tcttaacattattttctccaacaggcatt |
24543651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 39421626 - 39421574
Alignment:
| Q |
146 |
tatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataaca |
198 |
Q |
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| T |
39421626 |
tatcaaccattgattaacaaatcaaaggtagatattagaagtacaccataaca |
39421574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 3859436 - 3859408
Alignment:
| Q |
149 |
caaccattgattaacaaatcaaagttaga |
177 |
Q |
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| T |
3859436 |
caaccattgattaacaaatcaaagttaga |
3859408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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