View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1910_low_71 (Length: 250)

Name: NF1910_low_71
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1910_low_71
NF1910_low_71
[»] chr2 (44 HSPs)
chr2 (176-250)||(33659701-33659775)
chr2 (173-250)||(4316696-4316773)
chr2 (168-250)||(20171448-20171530)
chr2 (168-250)||(158100-158182)
chr2 (127-247)||(1770148-1770267)
chr2 (126-248)||(45273381-45273504)
chr2 (173-247)||(4700975-4701049)
chr2 (173-247)||(44898112-44898186)
chr2 (173-250)||(36244050-36244127)
chr2 (173-245)||(41541048-41541120)
chr2 (178-250)||(32113373-32113445)
chr2 (175-250)||(42756789-42756864)
chr2 (127-250)||(15507449-15507575)
chr2 (176-250)||(33659556-33659630)
chr2 (168-248)||(150288-150366)
chr2 (172-247)||(38589314-38589389)
chr2 (168-250)||(11083901-11083983)
chr2 (173-250)||(21252579-21252656)
chr2 (173-250)||(25965887-25965964)
chr2 (168-247)||(20891314-20891390)
chr2 (168-236)||(29408800-29408868)
chr2 (173-224)||(7486330-7486381)
chr2 (175-250)||(27746466-27746541)
chr2 (168-250)||(3309847-3309928)
chr2 (168-250)||(34424785-34424867)
chr2 (195-250)||(11073993-11074046)
chr2 (183-250)||(42872277-42872343)
chr2 (173-250)||(4959395-4959472)
chr2 (173-230)||(12411667-12411724)
chr2 (173-230)||(12423727-12423784)
chr2 (173-230)||(37814534-37814591)
chr2 (178-250)||(41117423-41117496)
chr2 (184-224)||(408513-408553)
chr2 (173-217)||(31193808-31193852)
chr2 (176-231)||(29882183-29882238)
chr2 (173-250)||(16806564-16806642)
chr2 (173-250)||(16845845-16845923)
chr2 (173-231)||(2218219-2218278)
chr2 (87-132)||(33024457-33024502)
chr2 (180-224)||(7412031-7412075)
chr2 (126-158)||(11084013-11084045)
chr2 (195-231)||(37360354-37360390)
chr2 (126-158)||(41541139-41541171)
chr2 (127-159)||(43043000-43043032)
[»] chr5 (34 HSPs)
chr5 (173-250)||(17201225-17201302)
chr5 (175-250)||(8544745-8544820)
chr5 (168-250)||(39614831-39614913)
chr5 (168-236)||(1590162-1590230)
chr5 (168-236)||(14654940-14655008)
chr5 (126-243)||(19924893-19925007)
chr5 (168-247)||(17202834-17202913)
chr5 (126-250)||(19931835-19931956)
chr5 (168-250)||(36246291-36246373)
chr5 (168-250)||(11992224-11992306)
chr5 (126-237)||(19922149-19922257)
chr5 (168-250)||(32717988-32718070)
chr5 (173-250)||(1583458-1583534)
chr5 (126-250)||(16365730-16365854)
chr5 (175-235)||(12436746-12436806)
chr5 (173-250)||(20201631-20201712)
chr5 (176-227)||(11825447-11825498)
chr5 (199-250)||(19803657-19803708)
chr5 (200-247)||(36437381-36437428)
chr5 (173-227)||(249553-249607)
chr5 (168-250)||(17591645-17591726)
chr5 (168-210)||(37269522-37269564)
chr5 (204-250)||(28619988-28620034)
chr5 (173-227)||(43346683-43346737)
chr5 (198-250)||(13220072-13220124)
chr5 (173-245)||(36194033-36194105)
chr5 (168-247)||(39940314-39940394)
chr5 (168-223)||(39584848-39584903)
chr5 (200-250)||(17557955-17558005)
chr5 (168-246)||(32474180-32474257)
chr5 (126-159)||(42674044-42674077)
chr5 (104-132)||(249384-249412)
chr5 (126-158)||(17201328-17201360)
chr5 (173-213)||(18552520-18552560)
[»] chr6 (21 HSPs)
chr6 (168-250)||(9095778-9095860)
chr6 (168-235)||(8049193-8049260)
chr6 (168-250)||(6111132-6111214)
chr6 (173-250)||(2437849-2437926)
chr6 (168-250)||(4665877-4665959)
chr6 (173-235)||(25056504-25056566)
chr6 (173-250)||(14093800-14093877)
chr6 (173-250)||(4122780-4122857)
chr6 (126-235)||(7972601-7972708)
chr6 (168-227)||(26252600-26252659)
chr6 (168-235)||(34889075-34889142)
chr6 (126-250)||(23410482-23410604)
chr6 (195-229)||(9353140-9353174)
chr6 (168-250)||(21527333-21527415)
chr6 (126-159)||(8460947-8460980)
chr6 (174-250)||(21014231-21014307)
chr6 (183-250)||(4184688-4184755)
chr6 (211-250)||(26252669-26252708)
chr6 (195-236)||(7833527-7833568)
chr6 (195-250)||(6396640-6396696)
chr6 (126-158)||(25056591-25056623)
[»] chr1 (29 HSPs)
chr1 (174-250)||(36319983-36320059)
chr1 (173-247)||(2655714-2655788)
chr1 (176-250)||(10430538-10430612)
chr1 (169-250)||(11238254-11238335)
chr1 (168-227)||(4671439-4671498)
chr1 (172-250)||(43021131-43021209)
chr1 (173-250)||(13254772-13254849)
chr1 (168-247)||(788293-788372)
chr1 (168-250)||(1674777-1674858)
chr1 (195-250)||(23698762-23698817)
chr1 (168-227)||(40519207-40519266)
chr1 (168-227)||(52414961-52415020)
chr1 (168-250)||(10101679-10101760)
chr1 (173-227)||(23699441-23699495)
chr1 (133-223)||(32769020-32769110)
chr1 (126-247)||(39386696-39386814)
chr1 (168-235)||(19269723-19269789)
chr1 (168-247)||(31623119-31623198)
chr1 (136-247)||(3901023-3901130)
chr1 (174-245)||(6295761-6295832)
chr1 (168-227)||(30280058-30280117)
chr1 (136-247)||(50488740-50488847)
chr1 (168-250)||(52281716-52281798)
chr1 (195-236)||(21535852-21535893)
chr1 (199-243)||(23913269-23913313)
chr1 (195-250)||(4396090-4396144)
chr1 (87-132)||(4395894-4395939)
chr1 (126-158)||(36319933-36319965)
chr1 (104-132)||(40519076-40519104)
[»] chr4 (45 HSPs)
chr4 (126-249)||(50720899-50721022)
chr4 (173-247)||(45635465-45635539)
chr4 (168-250)||(25490461-25490543)
chr4 (168-250)||(45666298-45666380)
chr4 (170-250)||(6949090-6949170)
chr4 (168-236)||(25493838-25493906)
chr4 (168-250)||(23529513-23529596)
chr4 (169-228)||(33889622-33889681)
chr4 (168-250)||(21956486-21956568)
chr4 (168-250)||(24538312-24538394)
chr4 (168-250)||(37209992-37210074)
chr4 (180-242)||(49263003-49263065)
chr4 (173-250)||(34032010-34032087)
chr4 (126-250)||(38840379-38840506)
chr4 (168-227)||(668035-668094)
chr4 (200-247)||(21342249-21342296)
chr4 (195-250)||(24074146-24074201)
chr4 (126-250)||(54982718-54982844)
chr4 (173-235)||(9089627-9089689)
chr4 (127-250)||(46016554-46016677)
chr4 (126-229)||(2492863-2492966)
chr4 (168-247)||(37371413-37371491)
chr4 (195-250)||(46195745-46195800)
chr4 (168-250)||(19443577-19443659)
chr4 (173-247)||(38434248-38434322)
chr4 (195-247)||(27650859-27650914)
chr4 (179-236)||(38044940-38044997)
chr4 (186-250)||(46250040-46250104)
chr4 (177-247)||(38045414-38045484)
chr4 (173-227)||(41502560-41502614)
chr4 (173-250)||(30913532-30913608)
chr4 (195-250)||(46196828-46196884)
chr4 (168-250)||(29961514-29961601)
chr4 (173-227)||(1821601-1821655)
chr4 (168-250)||(28130489-28130571)
chr4 (169-215)||(37234476-37234522)
chr4 (168-229)||(2684696-2684756)
chr4 (126-159)||(30913636-30913669)
chr4 (178-235)||(33808887-33808944)
chr4 (126-159)||(37209945-37209978)
chr4 (178-215)||(42219055-42219092)
chr4 (126-159)||(53370339-53370372)
chr4 (199-231)||(20782486-20782518)
chr4 (126-154)||(30912714-30912742)
chr4 (173-221)||(53370434-53370482)
[»] scaffold0005 (2 HSPs)
scaffold0005 (173-250)||(256743-256820)
scaffold0005 (168-247)||(272383-272462)
[»] chr8 (35 HSPs)
chr8 (173-250)||(16599386-16599463)
chr8 (184-250)||(14896628-14896694)
chr8 (168-250)||(34146182-34146264)
chr8 (172-250)||(7695302-7695380)
chr8 (168-247)||(9455236-9455315)
chr8 (195-250)||(32233627-32233682)
chr8 (126-236)||(16393717-16393827)
chr8 (173-242)||(5870762-5870831)
chr8 (126-247)||(25400472-25400593)
chr8 (126-247)||(25496651-25496772)
chr8 (173-250)||(38401565-38401642)
chr8 (173-228)||(3741656-3741711)
chr8 (168-231)||(39628293-39628356)
chr8 (168-231)||(39637843-39637906)
chr8 (173-250)||(4418569-4418645)
chr8 (184-249)||(7578227-7578292)
chr8 (168-236)||(38457284-38457352)
chr8 (168-235)||(27231787-27231854)
chr8 (173-228)||(29315879-29315934)
chr8 (195-250)||(30887896-30887950)
chr8 (174-229)||(45083036-45083091)
chr8 (173-250)||(1530603-1530680)
chr8 (168-236)||(2742941-2743009)
chr8 (127-247)||(41411430-41411546)
chr8 (173-228)||(36682579-36682633)
chr8 (136-247)||(40557213-40557319)
chr8 (168-250)||(3443733-3443815)
chr8 (126-236)||(34038904-34039013)
chr8 (190-250)||(4418910-4418971)
chr8 (126-158)||(1358855-1358887)
chr8 (195-231)||(44666215-44666251)
chr8 (195-250)||(1358941-1358996)
chr8 (87-132)||(1358732-1358777)
chr8 (177-230)||(11087146-11087199)
chr8 (126-158)||(27231867-27231899)
[»] chr7 (41 HSPs)
chr7 (127-250)||(28226545-28226667)
chr7 (168-250)||(2273520-2273602)
chr7 (126-250)||(35793075-35793200)
chr7 (173-247)||(15643335-15643409)
chr7 (168-233)||(2798619-2798684)
chr7 (173-250)||(7809208-7809285)
chr7 (173-250)||(37124171-37124248)
chr7 (168-247)||(24394233-24394312)
chr7 (173-250)||(43368782-43368859)
chr7 (126-250)||(10534976-10535098)
chr7 (126-250)||(16196783-16196905)
chr7 (168-250)||(3835674-3835754)
chr7 (168-247)||(4962944-4963023)
chr7 (168-247)||(25290620-25290699)
chr7 (173-236)||(10026227-10026292)
chr7 (173-250)||(4567313-4567390)
chr7 (127-247)||(36412806-36412922)
chr7 (168-235)||(39430609-39430676)
chr7 (173-247)||(39599702-39599777)
chr7 (168-230)||(1752595-1752657)
chr7 (168-250)||(12394114-12394202)
chr7 (168-227)||(39427421-39427481)
chr7 (173-216)||(4678434-4678477)
chr7 (195-250)||(39617541-39617596)
chr7 (195-250)||(44550028-44550083)
chr7 (194-250)||(39247324-39247379)
chr7 (127-159)||(43368892-43368924)
chr7 (199-250)||(14735092-14735143)
chr7 (173-236)||(39432603-39432666)
chr7 (200-250)||(14771449-14771499)
chr7 (200-250)||(15221901-15221951)
chr7 (195-247)||(1719906-1719959)
chr7 (173-234)||(8614843-8614903)
chr7 (202-231)||(37072425-37072454)
chr7 (126-158)||(2271870-2271902)
chr7 (126-158)||(3835611-3835643)
chr7 (127-159)||(10026158-10026190)
chr7 (195-235)||(27723302-27723342)
chr7 (104-132)||(37124370-37124398)
chr7 (104-132)||(41690024-41690052)
chr7 (168-216)||(46672046-46672094)
[»] chr3 (43 HSPs)
chr3 (168-250)||(25841940-25842022)
chr3 (173-246)||(633295-633368)
chr3 (173-250)||(25342389-25342466)
chr3 (139-250)||(19578329-19578440)
chr3 (174-250)||(5493550-5493626)
chr3 (178-250)||(27264110-27264182)
chr3 (174-250)||(45759965-45760041)
chr3 (126-250)||(375743-375868)
chr3 (168-247)||(9588745-9588824)
chr3 (168-250)||(45646597-45646679)
chr3 (175-236)||(7259718-7259779)
chr3 (178-247)||(19234007-19234076)
chr3 (168-227)||(21934489-21934548)
chr3 (173-250)||(296431-296509)
chr3 (173-250)||(20841318-20841393)
chr3 (173-250)||(2440662-2440738)
chr3 (173-250)||(34668679-34668756)
chr3 (127-247)||(54675151-54675266)
chr3 (184-235)||(1272438-1272489)
chr3 (195-250)||(20141043-20141098)
chr3 (180-250)||(37030985-37031055)
chr3 (126-236)||(45667467-45667576)
chr3 (173-250)||(2093773-2093850)
chr3 (168-233)||(19187671-19187736)
chr3 (169-250)||(23272051-23272132)
chr3 (195-250)||(1405224-1405279)
chr3 (195-250)||(10614597-10614652)
chr3 (200-247)||(29556540-29556587)
chr3 (172-227)||(38751096-38751151)
chr3 (178-236)||(16237604-16237662)
chr3 (168-250)||(27817414-27817495)
chr3 (126-159)||(9588855-9588888)
chr3 (127-159)||(15638453-15638485)
chr3 (173-229)||(23772254-23772312)
chr3 (168-227)||(44940873-44940932)
chr3 (168-214)||(3751492-3751538)
chr3 (126-159)||(2093872-2093905)
chr3 (104-132)||(1272633-1272661)
chr3 (126-158)||(2599148-2599180)
chr3 (126-158)||(3751554-3751586)
chr3 (104-132)||(21915644-21915672)
chr3 (169-217)||(25485838-25485886)
chr3 (126-158)||(37030938-37030970)
[»] scaffold0118 (2 HSPs)
scaffold0118 (173-250)||(14918-14994)
scaffold0118 (190-234)||(15273-15317)
[»] scaffold0188 (1 HSPs)
scaffold0188 (173-247)||(6403-6477)
[»] scaffold1130 (1 HSPs)
scaffold1130 (126-235)||(399-503)
[»] scaffold1327 (1 HSPs)
scaffold1327 (168-250)||(870-952)
[»] scaffold0242 (2 HSPs)
scaffold0242 (178-227)||(14823-14872)
scaffold0242 (178-227)||(23658-23707)
[»] scaffold0006 (1 HSPs)
scaffold0006 (183-236)||(46598-46651)


Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 33659775 - 33659701
Alignment:
Q  176 agttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33659775 agtttttcaaatatataatattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 33659701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 4316773 - 4316696
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4316773 tttagttttccaaatatataacattaattagttttattgaaaaagataagagtaattgacaaaagatataattgacaa 4316696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 20171448 - 20171530
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  20171448 caaactttagttttccaaatatataacattaattagttttattgaaaaagataagagtaattgacaaagggtataattgacaa 20171530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 158100 - 158182
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||  |||| | ||||||||||||    
T  158100 caaattttagttttccaaatatataaaattaattagttttattgaaaaagataagagtaatttgcaaagggtataattgacaa 158182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 1770148 - 1770267
Alignment:
Q  127 aattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagta 226  Q
    |||||||||||||||||||| | ||||||||||        |||| ||||||||| ||||||||||  ||||||||||||||||||||||  |||||||     
T  1770148 aattttaagataacaagaaatagactttgttttaaaaaaa-caaactttagtttttcaaatatataacattaattagttttattgaaaaaattaagagtg 1770246  T
Q  227 attgacaaatgatataattga 247  Q
    |||||||||||||||||||||    
T  1770247 attgacaaatgatataattga 1770267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 248
Target Start/End: Original strand, 45273381 - 45273504
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnnc-aaattttagttttccaaatatatattattaattagttttattgaaaaagataagag 224  Q
    |||||||||||||||||||||||||||||||||           ||| |||| ||||| ||||| |||| ||||||||||||||||||||||||||||||    
T  45273381 aaattttaagataacaagaaacaaactttgtttaaaaaaaatataaactttatttttctaaatagatatcattaattagttttattgaaaaagataagag 45273480  T
Q  225 taattgacaaatgatataattgac 248  Q
    ||||||||||| | ||||||||||    
T  45273481 taattgacaaagggtataattgac 45273504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 4700975 - 4701049
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||  |||||||||    
T  4700975 tttagttttccaaatatatagtattaattaattttattgaaaacgataagagtaattgacaaatagtataattga 4701049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 44898186 - 44898112
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  44898186 tttagtttttcaaatatataacattaattagttttattgaaaaagataagagtaattgacaaagggtataattga 44898112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 36244050 - 36244127
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||    
T  36244050 tttagttttccaaatatataacattaattagttttattaaaaaatataagagtaattgacaaagggtataattgacaa 36244127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 41541120 - 41541048
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataatt 245  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  41541120 tttagtttttcaaatatatagcattaattagttttattgaaaaagataagagtaaatgacaaaagatataatt 41541048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 32113373 - 32113445
Alignment:
Q  178 ttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||  |||||||||||||||||||||| |||||| ||||||| ||| ||||||||||||||    
T  32113373 ttttccaaatatataacattaattagttttattgaaaaatataagaataattgataaaggatataattgacaa 32113445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 42756864 - 42756789
Alignment:
Q  175 tagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||  |||||||||  |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||    
T  42756864 tagttttttaaatatatagcattaattagttttattgaaaaatataagaataattgacaaaagatataattgacaa 42756789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 15507575 - 15507449
Alignment:
Q  127 aattttaagataacaagaaacaaactttgtttt----nnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataag 222  Q
    |||||||||||||||| ||||||||||||||||            |||| ||||||||| ||| ||||||  ||||||||| ||||||||||||||||||    
T  15507575 aattttaagataacaaaaaacaaactttgttttaaaagaaacaaacaaactttagtttttcaattatatagcattaattag-tttattgaaaaagataag 15507477  T
Q  223 agtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||| | ||||||||||||    
T  15507476 agtaattgacaaagggtataattgacaa 15507449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 33659630 - 33659556
Alignment:
Q  176 agttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||||  |||||||||||||||||||||| |||||||||||| | ||||  ||||||||||||    
T  33659630 agttttccaaatatataacattaattagttttattgaaaaatataagagtaattaataaattgtataattgacaa 33659556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 150288 - 150366
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgac 248  Q
    |||| ||||||||| ||||||||||  |||||||||||||||||||||  |||||||||||||||||| | ||||||||||    
T  150288 caaactttagtttttcaaatatataacattaattagttttattgaaaa--ataagagtaattgacaaagggtataattgac 150366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 38589314 - 38589389
Alignment:
Q  172 ttttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    ||||||||||| ||||| |||  |||||||  |||||||||||||||||| ||||||||||||||| |||||||||    
T  38589314 ttttagttttctaaatagatagcattaattgattttattgaaaaagataaaagtaattgacaaatggtataattga 38589389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 11083983 - 11083901
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||| ||||||||||  |||||||||||||||| |||||||| |||| |||||||||| | ||||||| ||||    
T  11083983 caaactttagtttttcaaatatataacattaattagttttattaaaaaagatcagagaaattgacaaaaggtataattaacaa 11083901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 21252656 - 21252579
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||| |||||| |||  |||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||    
T  21252656 tttagtttttcaaatagatagcattaattaattttattgaaaaagataagtgtaattgacaaagagtataattgacaa 21252579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 25965887 - 25965964
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||| |||||||||| |  |||| ||||||||||||||| |||||||||||||||||| | |||| |||||||    
T  25965887 tttagtttttcaaatatataatgataatgagttttattgaaaaatataagagtaattgacaaagggtatagttgacaa 25965964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 20891314 - 20891390
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||| ||||||||||||||||||    |||||||||||||||||||||  | ||||||||||||||||||||||||||||    
T  20891314 caaactttagttttccaaatataac--attaattagttttattgaaaat-acaagagtaattgacaaatgatataattga 20891390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 29408800 - 29408868
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    |||| ||||||||| |||||| |||  |||||||| |||||||||||||||||| ||||||||||||||    
T  29408800 caaactttagttttgcaaatagataacattaattacttttattgaaaaagataaaagtaattgacaaat 29408868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 7486330 - 7486381
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagag 224  Q
    ||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  7486330 tttagttttccaaatatataacattaattagttttattgaaaaatataagag 7486381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 27746541 - 27746466
Alignment:
Q  175 tagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||| ||||||||||  |||||||||||||||||||||| |||| ||||||  ||||| | ||||||||||||    
T  27746541 tagtttttcaaatatatagcattaattagttttattgaaaaatataaaagtaataaacaaaaggtataattgacaa 27746466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 3309847 - 3309928
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||| |||||| |||  | |||||||||||||||||||| |||| ||||||||||||||  ||||||||||||    
T  3309847 caaactttagtttttcaaatagatagcaataattagttttattgaaaaa-ataaaagtaattgacaaattctataattgacaa 3309928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 34424785 - 34424867
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||| |||||||||||||||| |||||||||||||| |||||||| |||| | |||| |||||| | | ||||||||||    
T  34424785 caaacttttgttttccaaatatataatattaattagttttgttgaaaaatataataataatcgacaaagggtttaattgacaa 34424867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 11073993 - 11074046
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||  ||||||||||||||||||||||||| | ||||||||||||    
T  11073993 attaattagtttta--gaaaaagataagagtaattgacaaagggtataattgacaa 11074046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 42872277 - 42872343
Alignment:
Q  183 caaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||  |||||||||||| ||| ||||| |||||||||||||||||| | ||||||||||||    
T  42872277 caaatatataacattaattagttt-attaaaaaaaataagagtaattgacaaaaggtataattgacaa 42872343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 4959395 - 4959472
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||| ||||||||||||  |||||||| ||||||| ||||  |||||| | ||||||||| | ||||||||||||    
T  4959395 tttagttatccaaatatatagcattaattaattttattaaaaactataagaatgattgacaaacggtataattgacaa 4959472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 12411724 - 12411667
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattg 230  Q
    ||||||||| |||||||||| |  |||||||||||||||||||| |||||| ||||||    
T  12411724 tttagtttttcaaatatatagttataattagttttattgaaaaatataagaataattg 12411667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 12423784 - 12423727
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattg 230  Q
    ||||||||| |||||||||| |  |||||||||||||||||||| |||||| ||||||    
T  12423784 tttagtttttcaaatatatagttataattagttttattgaaaaatataagaataattg 12423727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 37814591 - 37814534
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattg 230  Q
    |||||||||  ||||| |||  ||| ||||||||||||||||||||||||||||||||    
T  37814591 tttagttttttaaatagatagaatttattagttttattgaaaaagataagagtaattg 37814534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 41117496 - 41117423
Alignment:
Q  178 ttttccaaatatatattattaattagttttattgaaaaaga-taagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||||| ||| ||||||||||||||||||||||| | ||||||||||||| |||   ||||||||||||    
T  41117496 tttttcaaatagatagtattaattagttttattgaaaaatagtaagagtaattgagaaagtctataattgacaa 41117423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 408513 - 408553
Alignment:
Q  184 aaatatatattattaattagttttattgaaaaagataagag 224  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  408513 aaatatatagtattaattagttttattgaaaaaggtaagag 408553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 31193852 - 31193808
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaag 217  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||    
T  31193852 tttaattttccaaataaataatattaattagttttattgaaaaag 31193808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 29882183 - 29882238
Alignment:
Q  176 agttttccaaatatatattattaattagttttattgaaaaagataagagtaattga 231  Q
    |||||| ||||||||||  ||| |||||||||||| ||||||||||||||| ||||    
T  29882183 agtttttcaaatatataacattgattagttttattcaaaaagataagagtagttga 29882238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 16806564 - 16806642
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttatt-gaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||| |||||| | |  ||||||||||||| || |||||| ||||| |||||||||||| | ||||||||||||    
T  16806564 tttagtttttcaaatagacaacattaattagttttttttgaaaaatataagtgtaattgacaaagggtataattgacaa 16806642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 16845845 - 16845923
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttatt-gaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||| |||||| | |  ||||||||||||| || |||||| ||||| |||||||||||| | ||||||||||||    
T  16845845 tttagtttttcaaatagacaacattaattagttttttttgaaaaatataagtgtaattgacaaagggtataattgacaa 16845923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 2218278 - 2218219
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattga--aaaagataagagtaattga 231  Q
    |||||||||| ||||| |||| ||||||||||||||||||  |||| ||||||||||||||    
T  2218278 tttagttttc-aaatagatatcattaattagttttattgaaaaaaaaataagagtaattga 2218219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 33024502 - 33024457
Alignment:
Q  87 ttatttttctcttggagttgttcttttactttgcacttgaaatttt 132  Q
    ||||||||||||  ||  ||||||||||||||||||||||||||||    
T  33024502 ttatttttctctcagatatgttcttttactttgcacttgaaatttt 33024457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 7412031 - 7412075
Alignment:
Q  180 ttccaaatatatattattaattagttttattgaaaaagataagag 224  Q
    ||||||||| ||| |||| || |||||||||||||||||||||||    
T  7412031 ttccaaatacataatatttataagttttattgaaaaagataagag 7412075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 11084045 - 11084013
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttt 158  Q
    ||||||||||||| |||||||||||||||||||    
T  11084045 aaattttaagatagcaagaaacaaactttgttt 11084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 37360390 - 37360354
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattga 231  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  37360390 attaattagttttagtgaaaaatataagagtaattga 37360354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 41541171 - 41541139
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttt 158  Q
    ||||||||||||||||||||||||||||| |||    
T  41541171 aaattttaagataacaagaaacaaactttattt 41541139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 43043032 - 43043000
Alignment:
Q  127 aattttaagataacaagaaacaaactttgtttt 159  Q
    |||||||||||||||||||||||| ||||||||    
T  43043032 aattttaagataacaagaaacaaattttgtttt 43043000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 17201302 - 17201225
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17201302 tttagttttccaaatagatagcattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 17201225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 8544745 - 8544820
Alignment:
Q  175 tagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||| |||   |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8544745 tagttttccaaataaataacgttaattagttttattgaaaaagataagagtaattgacagatgatataattgacaa 8544820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 39614913 - 39614831
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||| |||| ||||||||||  ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  39614913 caaactttaatttttcaaatatatagcattaattagttttgttgaaaaagataagagtaattaacaaaggatataattgacaa 39614831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 1590230 - 1590162
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    |||| ||||||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  1590230 caaactttagtttttcaaatatatagcattaattagttttattaaaaaagataagagtaattgacaaat 1590162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 14655008 - 14654940
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||    
T  14655008 caaactttagttttccaaatatatagcattaattagttttattgaaaaatataagaataattgacaaat 14654940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 19925007 - 19924893
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| |||||||||||||||||| ||||||||        |||| |||||||||| |||||||||  || |||||||||||||||||||||||||| |    
T  19925007 aaatttgaagataacaagaaacaaattttgttttaaaaaa--caaactttagttttc-aaatatataacatgaattagttttattgaaaaagataagaat 19924911  T
Q  226 aattgacaaatgatataa 243  Q
    |||||||||||| |||||    
T  19924910 aattgacaaatggtataa 19924893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 17202834 - 17202913
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||| |||||||||||||||| |||  |||||||||||||||||| |||||||| ||||||||||||| | |||||||||    
T  17202834 caaactttagttttccaaatagataacattaattagttttattgataaagataaaagtaattgacaaagggtataattga 17202913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 19931956 - 19931835
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| |||||||||||||||||| ||||||||        |||| |||||||||| |||||||||  || |||||||||||||||||||||||||| |    
T  19931956 aaatttgaagataacaagaaacaaattttgttttaaaaaa--caaactttagttttc-aaatatataacatgaattagttttattgaaaaagataagaat 19931860  T
Q  226 aattgacaaatgatataattgacaa 250  Q
    |||||||||||  ||||| ||||||    
T  19931859 aattgacaaatagtataactgacaa 19931835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 36246291 - 36246373
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||| ||| | ||||| ||||||    
T  36246291 caaactttagttttccaaacagatagtattcattagttttattgaaaaagataagagtaattgagaaagggtataagtgacaa 36246373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 11992224 - 11992306
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||||||||||||||| |||  |||||||| ||||| |||||||||||| ||||||||||| ||  ||||||||||||    
T  11992224 caaactttagttttccaaataaatagcattaattaattttactgaaaaagataaaagtaattgacagattgtataattgacaa 11992306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 19922257 - 19922149
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| |||||||||||||||||| ||||||||        |||| |||||||||| |||||||||  || |||||||||||||||||||||||||| |    
T  19922257 aaatttgaagataacaagaaacaaattttgttttaaaaaa--caaactttagttttc-aaatatataacatgaattagttttattgaaaaagataagaat 19922161  T
Q  226 aattgacaaatg 237  Q
    || |||||||||    
T  19922160 aactgacaaatg 19922149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 32717988 - 32718070
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||| ||||||||||  |||||||||||| ||||||||| |||||| ||| ||||||| | ||||||||||||    
T  32717988 caaactttagtttttcaaatatatagcattaattagtttaattgaaaaatataagaataactgacaaagggtataattgacaa 32718070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 1583534 - 1583458
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||| |||  |||||||||||||||||||||||| |||||| |||||||||   ||||||||||||    
T  1583534 tttagttttccaaatagatagcattaattagttttattgaaaaagacaagagt-attgacaaagagtataattgacaa 1583458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 16365854 - 16365730
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnn-caaattttagttttccaaatatatattattaattagttttattgaaaaagataagag 224  Q
    |||||| |||||||||||||||||| ||||||||         |||| |||||||| |||||||||||  | |||||||||||||||||||| ||||||     
T  16365854 aaatttgaagataacaagaaacaaattttgttttgagacaaaacaaactttagttt-ccaaatatatagcactaattagttttattgaaaaatataagaa 16365756  T
Q  225 taattgacaaatgatataattgacaa 250  Q
    |||||||||||   ||||||||||||    
T  16365755 taattgacaaaaagtataattgacaa 16365730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 12436746 - 12436806
Alignment:
Q  175 tagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    ||||||| |||||| |||  |||||||||||||||||||||| ||||||||||||||||||    
T  12436746 tagtttttcaaatagatagcattaattagttttattgaaaaatataagagtaattgacaaa 12436806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 20201712 - 20201631
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagt----aattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||  |||||||||||||||||||||| |||| |||    |||||||||| | ||||||||||||    
T  20201712 tttagttttccaaatatataacattaattagttttattgaaaaatataaaagtaagaaattgacaaagggtataattgacaa 20201631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 11825447 - 11825498
Alignment:
Q  176 agttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  11825447 agttttccaaatatacaacattaattagttttattgaaaaagataagagtaa 11825498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 19803708 - 19803657
Alignment:
Q  199 attagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  19803708 attagttttattgaaaaagataaaagtaattgacaaagggtataattgacaa 19803657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 36437381 - 36437428
Alignment:
Q  200 ttagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  36437381 ttagttttattgaaaaagataagagtaattgataaaggatataattga 36437428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 249553 - 249607
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  249553 tttagttttccaaatatatagcattaattagttttattaaaaaagataggagtaa 249607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 17591726 - 17591645
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||||||||||||||  |||  |||| |||||||||||||||||||||||||||||| | ||||| ||||| ||||||    
T  17591726 caaactttagttttccaaattgataacatta-ttagttttattgaaaaagataagagtaattaagaaatggtataaatgacaa 17591645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 37269564 - 37269522
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttatt 210  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  37269564 caaattttagttttccaaatatatatcattaattagttttatt 37269522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 28620034 - 28619988
Alignment:
Q  204 ttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||||||||||||||||||| | | ||||||||||    
T  28620034 ttttattgaaaaagataagagtaattgacaaagggtgtaattgacaa 28619988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 43346683 - 43346737
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    |||||||||| |||||||||  |||| ||||||||||| ||||||||||||||||    
T  43346683 tttagttttctaaatatatagcattacttagttttattaaaaaagataagagtaa 43346737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 13220072 - 13220124
Alignment:
Q  198 aattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||| |||||||||| |||| |||||||| ||||||||| ||||    
T  13220072 aattagttttattaaaaaagataaaagtagttgacaaaagatataattaacaa 13220124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 36194033 - 36194105
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataatt 245  Q
    |||| |||| |||||| |||  |||||||||||| ||| ||||||||||||||| |||| ||||| |||||||    
T  36194033 tttaatttttcaaatagataacattaattagtttgattcaaaaagataagagtacttgaaaaatggtataatt 36194105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 39940314 - 39940394
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttatt-gaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||| ||||||| |||||||| |||  ||||||||||||||||  ||||| |||||||| ||||||||| | |||||||||    
T  39940314 caaaatttagttatccaaatagatagcattaattagttttattaaaaaaatataagagttattgacaaaaggtataattga 39940394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 39584903 - 39584848
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataaga 223  Q
    |||| |||||||||||||||| |||  ||||||| ||||||| |||||||||||||    
T  39584903 caaactttagttttccaaatacataagattaattggttttatcgaaaaagataaga 39584848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 17558005 - 17557955
Alignment:
Q  200 ttagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||| |||||||||| |||||| ||||||||||| | ||||||||||||    
T  17558005 ttagttatattgaaaaatataagaataattgacaaagggtataattgacaa 17557955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 32474257 - 32474180
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattg 246  Q
    |||| |||| ||||||||||| |||  |||||||||||||||||||||| | | |||||||||| ||| | ||||||||    
T  32474257 caaactttaattttccaaatagatagcattaattagttttattgaaaaa-aaatgagtaattgataaagggtataattg 32474180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 42674044 - 42674077
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgtttt 159  Q
    |||||| |||||||||||||||||||||||||||    
T  42674044 aaatttgaagataacaagaaacaaactttgtttt 42674077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 249384 - 249412
Alignment:
Q  104 ttgttcttttactttgcacttgaaatttt 132  Q
    |||||||||||||||||||||||||||||    
T  249384 ttgttcttttactttgcacttgaaatttt 249412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 17201360 - 17201328
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttt 158  Q
    |||||| ||||||||||||||||||||||||||    
T  17201360 aaatttgaagataacaagaaacaaactttgttt 17201328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 18552520 - 18552560
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaa 213  Q
    |||||||||| ||||| |||| |||||||||||||||||||    
T  18552520 tttagttttctaaatagatatcattaattagttttattgaa 18552560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 9095778 - 9095860
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  9095778 caaattttagttttccaaatatatagcattaattagttttattgaaaaatataagaataattgacaaatggtataattgacaa 9095860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 8049260 - 8049193
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  8049260 caaactttagttttccaaatagatatcattaattagttttattgaaaaagataagagtaattgacaaa 8049193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 6111132 - 6111214
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||    
T  6111132 caaactttagttttccaaatatataacattaattagttttatttaaaaagataagagtaattgataaatggtataactgacaa 6111214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 2437849 - 2437926
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||| | ||||||||||||    
T  2437849 tttagttttccaaatagatatcattaattagttttattgaaaaaaataagaataattgacaaagggtataattgacaa 2437926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 4665959 - 4665877
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||| ||||||||||  |||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||    
T  4665959 caaactttagtttttcaaatatatagcattaattagttttatttaaaaatataagagtaattgataaatggtataattgacaa 4665877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 25056566 - 25056504
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  25056566 tttagttttccaaatagatagcattaattagttttattgaaaaagataagagtaattgacaaa 25056504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 14093800 - 14093877
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||| ||||  |||  |||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  14093800 tttagttttcaaaatcgatagcattaattagttttattgaaaaagataagagtaattgacaaagagtataattgacaa 14093877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 4122857 - 4122780
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||| |||||| |||  |||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  4122857 tttactttttcaaatagataacattaattaattttattgaaaaagataagagtaattgagaaatggtataagtgacaa 4122780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 7972601 - 7972708
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| |||||||||||||||||| |||||||         |||| ||||||||| ||||||||||  |||||||||||||||||||||| || ||| |    
T  7972601 aaatttgaagataacaagaaacaaattttgttt--aaaaaaacaaactttagtttttcaaatatataacattaattagttttattgaaaaatattagaat 7972698  T
Q  226 aattgacaaa 235  Q
    ||||||||||    
T  7972699 aattgacaaa 7972708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 26252600 - 26252659
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    |||| |||| |||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  26252600 caaactttatttttccaaatatatagcattaattagttttattaaaaaagataagagtaa 26252659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 34889142 - 34889075
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    |||| |||| |||| ||||||||||  | ||||||||||||||||||||||||||||||||| |||||    
T  34889142 caaactttaatttttcaaatatataacaataattagttttattgaaaaagataagagtaattaacaaa 34889075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 23410604 - 23410482
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    ||||||||||||||||||||||||||||||||           ||| ||||| | ||||||||||||  |||||||||||||||| |||||||||| |||    
T  23410604 aaattttaagataacaagaaacaaactttgtt--aaaaaaaaaaaactttagctatccaaatatataacattaattagttttattaaaaaagataaaagt 23410507  T
Q  226 aattgacaaatgatataattgacaa 250  Q
    ||||  ||||   ||||||||||||    
T  23410506 aatttgcaaagagtataattgacaa 23410482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 9353174 - 9353140
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaatt 229  Q
    |||||||||||||||||||||||||||||||||||    
T  9353174 attaattagttttattgaaaaagataagagtaatt 9353140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 21527333 - 21527415
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||| |||||||| |  |||||||||||||| ||||||| || ||| ||||||||||| | | ||||||||||    
T  21527333 caaactttagtttttcaaatataaagcattaattagttttaatgaaaaatattagaataattgacaaagggtttaattgacaa 21527415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 8460980 - 8460947
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgtttt 159  Q
    ||||||||||||||||||||||||||||||||||    
T  8460980 aaattttaagataacaagaaacaaactttgtttt 8460947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 21014231 - 21014307
Alignment:
Q  174 ttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||| ||||| |||| |||| ||||||| ||||||||| |||| ||| ||||| ||| | ||||||||||||    
T  21014231 ttagttttctaaataaatataattatttagtttgattgaaaaaaataaaagttattgagaaagggtataattgacaa 21014307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 4184755 - 4184688
Alignment:
Q  183 caaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||  |||||||| ||||||| ||||| |||||||||||||| ||||   |||||||||||    
T  4184755 caaatatatagcattaattaattttatttaaaaatataagagtaattgataaatagaataattgacaa 4184688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 26252669 - 26252708
Alignment:
Q  211 gaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||| |||||||||||||||| ||||||||||||    
T  26252669 gaaaaagatacgagtaattgacaaatggtataattgacaa 26252708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 7833568 - 7833527
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    |||||||| ||||||| |||||||||||||||||||| ||||    
T  7833568 attaattaattttattaaaaaagataagagtaattgaaaaat 7833527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 6396640 - 6396696
Alignment:
Q  195 attaattagttttattg-aaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||| |||||||||||| ||||| | ||| | ||||||||||||    
T  6396640 attaattagttttattgaaaaaagataagaataattaagaaagggtataattgacaa 6396696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 25056623 - 25056591
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttt 158  Q
    |||||| ||||||||||||||||||||||||||    
T  25056623 aaatttgaagataacaagaaacaaactttgttt 25056591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 36319983 - 36320059
Alignment:
Q  174 ttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36319983 ttagttttccaaatagatagcattaattagttttattgaaaaagataagagtaattgacaaatggtataattgacaa 36320059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 2655788 - 2655714
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  2655788 tttagttttccaaatatataacattaattagttttattgaaaaatataagagtaattgacaaatggtataattga 2655714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 10430538 - 10430612
Alignment:
Q  176 agttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  10430538 agttttgcaaatatatagcattaattagttttattaaaaaagataagagtaattgacaaatggtataattgacaa 10430612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 11238254 - 11238335
Alignment:
Q  169 aaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| |||| | ||||| ||||||    
T  11238254 aaattttagttttccaaatatatatcattaattagttttattgaaaaatataagaataattgccaaagggtataactgacaa 11238335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 4671498 - 4671439
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  4671498 caaattttagttttccaaatatatagtattaattagttttattaaaaaagataagagtaa 4671439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 43021209 - 43021131
Alignment:
Q  172 ttttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||| ||||||||||  |||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||    
T  43021209 ttttagtttttcaaatatataacattaattagttttattgataaatataagagtaattggcaaatggtataattgacaa 43021131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 13254772 - 13254849
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||    
T  13254772 tttagttctccaaatagatagcattaattagttttattgaaaaagataagagtaattgataaaaggtataattgacaa 13254849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 788293 - 788372
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||| |||| |||||||||||||||  |||||||||||||||||||||| || ||| ||||||||||||| |||||||||    
T  788293 caaactttatttttccaaatatataacattaattagttttattgaaaaatattagaataattgacaaatggtataattga 788372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 1674777 - 1674858
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||| ||||||||||  |||||||||||||||||||||| |||||| ||||||||||| | ||||||||||||    
T  1674777 caaactttagtttttcaaatatataacattaattagttttattgaaaaatataagaataattgacaaa-ggtataattgacaa 1674858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 23698817 - 23698762
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  23698817 attaattagttttatttaaaaatataagagtaattgacaaaggatataattgacaa 23698762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 40519207 - 40519266
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    |||| ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  40519207 caaactttagttttccaaatatatagcattaattagttttattaaaaaagataagagtaa 40519266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 52415020 - 52414961
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    |||| ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  52415020 caaactttagttttccaaatatataacattaattagttttattaaaaaagataagagtaa 52414961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 10101679 - 10101760
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||||||||||||||| |||  |||| |||||||||||||||||||||||||||||||| ||| | ||||| ||||||    
T  10101679 caaactttagttttccaaatagatagcatta-ttagttttattgaaaaagataagagtaattgagaaagggtataagtgacaa 10101760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 23699441 - 23699495
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||| ||||    
T  23699441 tttagttttccaaatatatagcattaattagttttattgaaaaagataagcgtaa 23699495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 32769110 - 32769020
Alignment:
Q  133 aagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataaga 223  Q
    |||||||||||||||||| ||||||||         ||| ||||||||| ||||||||||| |||||||||||||||| ||||||||||||    
T  32769110 aagataacaagaaacaaattttgttttttaaaaaataaactttagtttttcaaatatatatcattaattagttttattaaaaaagataaga 32769020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 39386814 - 39386696
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| ||||||||||||||||||||||||||          ||| |||| ||||||||||| ||  ||||||||||||  ||||||||||||||||||    
T  39386814 aaatttgaagataacaagaaacaaactttgtttaaaaaaaat-aaactttatttttccaaatagattgtattaattagtt--attgaaaaagataagagt 39386718  T
Q  226 aattgacaaatgatataattga 247  Q
    |||||||||| | |||||||||    
T  39386717 aattgacaaagggtataattga 39386696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 19269789 - 19269723
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    |||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||    
T  19269789 caaacttttgttttccaaatatatattattaattaattttattgaaaaa-ataagagcaatcgacaaa 19269723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 31623119 - 31623198
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    ||||||||||||||| |||||||||  |||||||| |||||| |||||| |||||| ||||||| ||| | |||||||||    
T  31623119 caaattttagttttcgaaatatataacattaattaattttatggaaaaatataagaataattgataaagggtataattga 31623198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 247
Target Start/End: Complemental strand, 3901130 - 3901023
Alignment:
Q  136 ataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    ||||||||||||||||||||||||         ||| ||||||||| ||||| ||||  ||||||||||||| ||||||||||||||||||||  |||||    
T  3901130 ataacaagaaacaaactttgttttaaaaaa---aaactttagtttttcaaatttataacattaattagtttt-ttgaaaaagataagagtaatcaacaaa 3901035  T
Q  236 tgatataattga 247  Q
     | |||||||||    
T  3901034 gggtataattga 3901023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 6295761 - 6295832
Alignment:
Q  174 ttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataatt 245  Q
    |||||||| |||||| |||  |||||||||||||||| |||||||||| ||||| ||||||| | |||||||    
T  6295761 ttagtttttcaaatagatagcattaattagttttatttaaaaagataaaagtaagtgacaaagggtataatt 6295832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 30280117 - 30280058
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    |||| |||||||||||||||||| |  |||||||||||||||| || |||||||||||||    
T  30280117 caaactttagttttccaaatatacaacattaattagttttattaaagaagataagagtaa 30280058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 50488740 - 50488847
Alignment:
Q  136 ataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    ||||||||||||||||||||||||         ||| ||||||||| ||||| ||||  ||||||||||||| ||||||||||||||||||||  |||||    
T  50488740 ataacaagaaacaaactttgttttaaaaaa---aaactttagtttttcaaatttataacattaattagtttt-ttgaaaaagataagagtaatcaacaaa 50488835  T
Q  236 tgatataattga 247  Q
     | |||||||||    
T  50488836 gggtataattga 50488847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 52281798 - 52281716
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||||||||  ||||| |||  |||||||||||||||||||||||||  ||||| |||| ||| ||||||| ||||||    
T  52281798 caaactttagttttttaaatagataacattaattagttttattgaaaaagatccgagtagttgagaaaggatataagtgacaa 52281716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 21535852 - 21535893
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  21535852 attaattagttttattgaaaaatataagaataattgacaaat 21535893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 23913313 - 23913269
Alignment:
Q  199 attagttttattgaaaaagataagagtaattgacaaatgatataa 243  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||    
T  23913313 attagttttattgaaaaagataagggtaattgagaaatgacataa 23913269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 4396090 - 4396144
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||||||||| ||| ||||||||||||||  | |||||||||||    
T  4396090 attaattagttttattgaaaaa-atatgagtaattgacaaagtaaataattgacaa 4396144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 4395894 - 4395939
Alignment:
Q  87 ttatttttctcttggagttgttcttttactttgcacttgaaatttt 132  Q
    ||||||||||||  ||  ||||||||||||||||||||||||||||    
T  4395894 ttatttttctctcagatatgttcttttactttgcacttgaaatttt 4395939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 36319933 - 36319965
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttt 158  Q
    |||||| ||||||||||||||||||||||||||    
T  36319933 aaatttgaagataacaagaaacaaactttgttt 36319965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 40519076 - 40519104
Alignment:
Q  104 ttgttcttttactttgcacttgaaatttt 132  Q
    |||||||||||||||||||||||||||||    
T  40519076 ttgttcttttactttgcacttgaaatttt 40519104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 50721022 - 50720899
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| ||||||| ||||||||||||||||||         |||| ||| ||||| |||||| |||  |||||||||||||||||||||||||||||||    
T  50721022 aaatttgaagataataagaaacaaactttgtttaaaaataaacaaacttttgtttttcaaatagatagcattaattagttttattgaaaaagataagagt 50720923  T
Q  226 aattgacaaatgatataattgaca 249  Q
    |||||||||||| |||||||||||    
T  50720922 aattgacaaatggtataattgaca 50720899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 45635465 - 45635539
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  45635465 tttagttttccaaatatataacattaattagttttattgaaaaatataagagtaattgacaaatggtataattga 45635539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 25490543 - 25490461
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||||||||||||||  |||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||    
T  25490543 caaactttagttttccaaatatataacattaattatttttattgaaaatgataagagtaattgacaaatggtataattaacaa 25490461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 45666380 - 45666298
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  45666380 caaactttaattttccaaatagatattattaataagttttattgaaaaagataaaagtaattgacaaagggtataattgacaa 45666298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 6949170 - 6949090
Alignment:
Q  170 aattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||| |||||| ||| |||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6949170 aattgtagctttccatatagatagcattaattagttttattgaaaaagataagagtaattgacaaatggtataattgacaa 6949090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 25493906 - 25493838
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    |||| |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||| |||||    
T  25493906 caaactttagttttccaaatagataacattaattagttttattgaaaaagataagagtaattgtcaaat 25493838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 23529596 - 23529513
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattga-aaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||| |||  |||||||||||||||||| ||||||||| ||||||||| ||| | ||||||||||||    
T  23529596 caaattttagttttccaaataaatagcattaattagttttattgaaaaaagataaaagtaattgagaaaaggtataattgacaa 23529513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 33889681 - 33889622
Alignment:
Q  169 aaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaat 228  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||    
T  33889681 aaattttagttttccaaatatatagcattaattagttttattaaaaaagataagagtaat 33889622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 21956486 - 21956568
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||| ||||||  || ||||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||||    
T  21956486 caaactttagtttttcaaataggtaatattaattagttttattgaaaaagataagagtatttgagaaaagatataagtgacaa 21956568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 24538312 - 24538394
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||||||||||||||  | |||||||||||||||||||| |||||| ||||||||||| | | ||||||||||    
T  24538312 caaactttagttttccaaatatataacactaattagttttattgaaaaatataagaataattgacaaaggttgtaattgacaa 24538394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 37209992 - 37210074
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||||||||||||||| |||  ||| ||||||||||||||||||||||| | ||||||||||| | ||||||||||||    
T  37209992 caaactttagttttccaaatagatagcattgattagttttattgaaaaagataaaaataattgacaaagggtataattgacaa 37210074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 49263065 - 49263003
Alignment:
Q  180 ttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatata 242  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  49263065 ttccaaatagatatcattaattagttttattgaaaaagataagagtaattgataaatcatata 49263003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 34032010 - 34032087
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||| ||||| ||| |||||||||||||||||||||||||||| | ||||| ||||| | ||||||||||||    
T  34032010 tttagttttctaaatagataatattaattagttttattgaaaaagataaaactaattaacaaagggtataattgacaa 34032087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 38840379 - 38840506
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnn---caaattttagttttccaaatatatattattaattagttttattgaaaaagataag 222  Q
    |||||| |||||||||||||||||||||||||||           |||| ||||||||| |||||| |||  |||||||||||||| | ||||||||||     
T  38840379 aaatttgaagataacaagaaacaaactttgttttaaaataacaaacaaactttagtttttcaaatagatagcattaattagttttactaaaaaagataaa 38840478  T
Q  223 agtaattgacaaatgatataattgacaa 250  Q
    |||||||| |||| ||||||||||||||    
T  38840479 agtaattgtcaaaggatataattgacaa 38840506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 668035 - 668094
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    |||| ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  668035 caaactttagttttccaaatatataacattaattagttttatttaaaaagataagagtaa 668094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 21342249 - 21342296
Alignment:
Q  200 ttagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  21342249 ttagttttattgaaaaagataagagtaattaacaaatgatataattga 21342296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 24074146 - 24074201
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||    
T  24074146 attaattagttttattgaaaaagttaagagtaattgacaaagggtataattgacaa 24074201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 54982718 - 54982844
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnn--caaattttagttttccaaatatatattattaattagttttattgaaaaagataaga 223  Q
    |||||| ||||||||||||||||||||||||||           |||| |||||||||||||||| |||  |||| |||||||||||||||| ||||| |    
T  54982718 aaatttgaagataacaagaaacaaactttgtttaaaaagaaaaccaaactttagttttccaaatagatagcattagttagttttattgaaaaggataaaa 54982817  T
Q  224 gtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||   ||||||||||||    
T  54982818 gtaattgacaaagagtataattgacaa 54982844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 9089627 - 9089689
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    |||| |||| |||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  9089627 tttaatttttcaaatagatagcattaattagttttattgaaaaagataagagtaattgacaaa 9089689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 46016554 - 46016677
Alignment:
Q  127 aattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatat--tattaattagttttattgaaaaagataagag 224  Q
    |||||| ||||||||||||||||| ||||||||         ||| |||||||| ||| ||||||||  | ||||||||||| |||||||||||||||||    
T  46016554 aattttgagataacaagaaacaaattttgttttttaaaaa--aaactttagtttaccatatatatatagttttaattagtttgattgaaaaagataagag 46016651  T
Q  225 taattgacaaatgatataattgacaa 250  Q
    ||||| ||||||||| |||| |||||    
T  46016652 taattaacaaatgatgtaatcgacaa 46016677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 2492966 - 2492863
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| |||||||||| ||||||| ||||||||         ||| ||||||||| |||||| |||  |||||||||||||||| ||||||||||||||    
T  2492966 aaatttgaagataacaaaaaacaaattttgtttttaaaaaaataaactttagtttttcaaatagatagcattaattagttttattaaaaaagataagagt 2492867  T
Q  226 aatt 229  Q
    ||||    
T  2492866 aatt 2492863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 37371413 - 37371491
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||| ||| ||||| ||||||||||| |||||| ||||||||||||||| |||||| ||||||||||| | |||||||||    
T  37371413 caaactttggtttttcaaatatatatcattaat-agttttattgaaaaatataagaataattgacaaagggtataattga 37371491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 46195800 - 46195745
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||    
T  46195800 attaattagttttactgaaaaagataaaagtaattgacaaagggtataattgacaa 46195745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 19443577 - 19443659
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||| |||| |||||| ||| ||||| ||||||||| | |||||||||| ||||||||||||| | ||||||||||||    
T  19443577 caaactttaatttttcaaatagatagtattacttagttttactaaaaaagataaaagtaattgacaaagggtataattgacaa 19443659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 38434248 - 38434322
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    ||||||||| ||||||||||  | |||||||||||||||||||| |||||| ||||||| ||| | |||||||||    
T  38434248 tttagtttttcaaatatatagcactaattagttttattgaaaaatataagaataattgataaagggtataattga 38434322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 27650859 - 27650914
Alignment:
Q  195 attaattagttttattgaaaaagataa---gagtaattgacaaatgatataattga 247  Q
    ||||||||||||||||||||| |||||   ||||||||||||||||||||||||||    
T  27650859 attaattagttttattgaaaatgataataagagtaattgacaaatgatataattga 27650914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 38044940 - 38044997
Alignment:
Q  179 tttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    |||||||||| ||| ||||||||| ||||||||||||| ||||||| |||||||||||    
T  38044940 tttccaaatagataatattaattaattttattgaaaaatataagagaaattgacaaat 38044997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 46250104 - 46250040
Alignment:
Q  186 atatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||| | ||||||||||| |||||||||||||||||||||| |||||| || |||| |||||    
T  46250104 atatatagttttaattagtttgattgaaaaagataagagtaattaacaaataatgtaatcgacaa 46250040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 38045484 - 38045414
Alignment:
Q  177 gttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||||||||||| |||  |||||||| ||||||||||| | |||||||||||||| ||| | |||||||||    
T  38045484 gttttccaaatagatagcattaattacttttattgaaagatataagagtaattgataaagggtataattga 38045414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 41502614 - 41502560
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    ||||||||| ||||||||||  |||||||| ||||||| ||||||||||||||||    
T  41502614 tttagtttttcaaatatataacattaattaattttattaaaaaagataagagtaa 41502560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 30913608 - 30913532
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||| |||||||||   ||||||||||||||||||||| |||| ||||||||| ||| | ||||||| ||||    
T  30913608 tttagttttcgaaatatataacgttaattagttttattgaaaaacataa-agtaattgataaagggtataattcacaa 30913532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 46196828 - 46196884
Alignment:
Q  195 attaattagttttattgaaaaag-ataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||||  |||||||||||||||||||  | ||||||||||    
T  46196828 attaattagttttattgaaaaaatataagagtaattgacaaatagtgtaattgacaa 46196884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 29961514 - 29961601
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaaga-----taagagtaattgacaaatgatataattgacaa 250  Q
    |||||||  ||||| |||||| ||| |||| ||||||||||||||||||||     ||||||||||||| |||  |||||||||||||    
T  29961514 caaatttgggtttttcaaatagatagtatttattagttttattgaaaaagaggaggtaagagtaattgataaagaatataattgacaa 29961601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 1821601 - 1821655
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    |||| ||||||||||| |||| |||||||||||||| |||||||| ||| |||||    
T  1821601 tttaattttccaaatagatatcattaattagttttactgaaaaaggtaaaagtaa 1821655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 28130571 - 28130489
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||| ||||||| || |||  ||||| || ||||||| |||| ||||||||||||| | ||||| ||||||||||||    
T  28130571 caaactttagatttccaagtacataacattaactaattttattaaaaaggataagagtaattaaaaaatgttataattgacaa 28130489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 37234522 - 37234476
Alignment:
Q  169 aaattttagttttccaaatatatattattaattagttttattgaaaa 215  Q
    |||||| | ||||||||||||| | ||||||||||||||||||||||    
T  37234522 aaatttgaattttccaaatatacaatattaattagttttattgaaaa 37234476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 2684756 - 2684696
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaatt 229  Q
    |||| |||||||||||||||| |||  ||| ||  |||||||||||||||||||||||||||    
T  2684756 caaactttagttttccaaatagatagcatttatc-gttttattgaaaaagataagagtaatt 2684696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 30913669 - 30913636
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgtttt 159  Q
    |||||||||||||||||||||||| |||||||||    
T  30913669 aaattttaagataacaagaaacaagctttgtttt 30913636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 33808944 - 33808887
Alignment:
Q  178 ttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    |||| ||||||||||  |||||||| |||||||||||||  ||||||||||| |||||    
T  33808944 tttttcaaatatataacattaattaattttattgaaaaatgtaagagtaattaacaaa 33808887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 37209945 - 37209978
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgtttt 159  Q
    |||||| |||||||||||||||||||||||||||    
T  37209945 aaatttgaagataacaagaaacaaactttgtttt 37209978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 42219055 - 42219092
Alignment:
Q  178 ttttccaaatatatattattaattagttttattgaaaa 215  Q
    |||||||||||||||  |||||||||||||||||||||    
T  42219055 ttttccaaatatataacattaattagttttattgaaaa 42219092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 53370339 - 53370372
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgtttt 159  Q
    |||||||||||||| |||||||||||||||||||    
T  53370339 aaattttaagataataagaaacaaactttgtttt 53370372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 20782518 - 20782486
Alignment:
Q  199 attagttttattgaaaaagataagagtaattga 231  Q
    |||||||||||||||||| ||||||||||||||    
T  20782518 attagttttattgaaaaatataagagtaattga 20782486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 30912742 - 30912714
Alignment:
Q  126 aaattttaagataacaagaaacaaacttt 154  Q
    |||||||||||||||||||||||||||||    
T  30912742 aaattttaagataacaagaaacaaacttt 30912714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 53370434 - 53370482
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataa 221  Q
    |||||||||| |||||||||  ||||| ||| |||||||||||||||||    
T  53370434 tttagttttcaaaatatatagcattaactagatttattgaaaaagataa 53370482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 256820 - 256743
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  256820 tttagttttccaaatagataacattaattagttttattgaaaaagataagagaaattgacaaatggtataattgacaa 256743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 272383 - 272462
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||| |||| |||| ||||||| || ||||  ||||||||||||||||| ||||| |||||||||| | | |||||||||    
T  272383 caaactttaatttttcaaatatgtagtattcgttagttttattgaaaaatataagtgtaattgacagaggttataattga 272462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 16599386 - 16599463
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  16599386 tttagttttacaaatatatatcattaattagttttattgaaaaagataagagtaattgataaatggtataactgacaa 16599463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 14896694 - 14896628
Alignment:
Q  184 aaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14896694 aaatatataacattaattagttttattgaaaaagataagagtaattgacaaatgatatatttgacaa 14896628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 34146264 - 34146182
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  34146264 caaactttagttttccaaatagacatcattaattagttttattgaaaaagataagagtaattgacaaagagtataattgacaa 34146182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 7695302 - 7695380
Alignment:
Q  172 ttttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||| |||||| |||  ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  7695302 ttttagtttttcaaatagataacattaactagttttattgaaaaagataagagtaattaaaaaatgatataattgacaa 7695380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 9455315 - 9455236
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||| |||| |||| ||||||||||  |||||||||||||||||||||| |||||| ||||||||||||| |||||||||    
T  9455315 caaactttattttttcaaatatatagcattaattagttttattgaaaaatataagaataattgacaaatggtataattga 9455236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 32233682 - 32233627
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  32233682 attaattagttttattgaaaaagataagagtaattgacaaagggtataattgacaa 32233627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 16393827 - 16393717
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| |||||||||| ||| |||||||||||         |||| |||||||||||||||| |||  ||||||||||||||||||||||| ||| |||    
T  16393827 aaatttgaagataacaaaaaataaactttgtttaaaaaaaaccaaactttagttttccaaatagatagcattaattagttttattgaaaaagctaaaagt 16393728  T
Q  226 aattgacaaat 236  Q
    |||||||||||    
T  16393727 aattgacaaat 16393717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 5870831 - 5870762
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatata 242  Q
    ||||||||| |||||| |||  ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  5870831 tttagtttttcaaatagataacattaattagttttattgaaaatgataagaataattgacaaatgatata 5870762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 25400593 - 25400472
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| ||||||| ||||||||||||||| ||         |||| |||||||||||||||| |||  ||||||||||||||||||||| ||||| |||    
T  25400593 aaatttaaagataataagaaacaaactttgcttaaaataaaacaaactttagttttccaaatagatagcattaattagttttattgaaaaggataaaagt 25400494  T
Q  226 aattgacaaatgatataattga 247  Q
    |||| ||||| | |||||||||    
T  25400493 aattaacaaagggtataattga 25400472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 25496772 - 25496651
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| ||||||| ||||||||||||||| ||         |||| ||||||||| |||||| |||  ||||||||||||||||||||||||||| |||    
T  25496772 aaatttaaagataataagaaacaaactttgcttaaaataaaacaaactttagtttttcaaatagatagcattaattagttttattgaaaaagataaaagt 25496673  T
Q  226 aattgacaaatgatataattga 247  Q
    |||| ||||| | |||||||||    
T  25496672 aattaacaaagggtataattga 25496651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 38401642 - 38401565
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||| ||||| |||  |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||    
T  38401642 tttaattttcgaaataaataacattaattaattttattaaaaaagataagagtaattgacaaataatataattgacaa 38401565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 3741711 - 3741656
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaat 228  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||||||||||||    
T  3741711 tttagttttccaaatatatagcattaattagttttattaaaaaagataagagtaat 3741656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 39628293 - 39628356
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattga 231  Q
    |||| |||||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||    
T  39628293 caaactttagttttccaaatagataacattaattagttttattgaaaaaaataagagtaattga 39628356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 39637843 - 39637906
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattga 231  Q
    |||| |||||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||    
T  39637843 caaactttagttttccaaatagataacattaattagttttattgaaaaaaataagagtaattga 39637906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 4418645 - 4418569
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||| || ||||||||||||   ||||||||||||    
T  4418645 tttagttttccaaatatatagcattaattagttttatt-aaaaagatgagggtaattgacaaagagtataattgacaa 4418569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 7578227 - 7578292
Alignment:
Q  184 aaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgaca 249  Q
    |||||||||  |||||||||||||||||||||| |||||| ||||||||||| | |||||||||||    
T  7578227 aaatatatagcattaattagttttattgaaaaatataagaataattgacaaagggtataattgaca 7578292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 38457352 - 38457284
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    |||| |||||||||||||||| |||  ||||||||||||||||||||||||||| | ||||||| ||||    
T  38457352 caaactttagttttccaaatagatagcattaattagttttattgaaaaagataaaaataattgataaat 38457284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 27231854 - 27231787
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    |||| |||||||||||||||| |||  |||||||||||||||||||||| |||||| ||||| |||||    
T  27231854 caaactttagttttccaaatagatagcattaattagttttattgaaaaaaataagaataattaacaaa 27231787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 29315879 - 29315934
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaat 228  Q
    ||||||||||||||||||||  |||| ||||||||||| |||||||||||||||||    
T  29315879 tttagttttccaaatatatagcattacttagttttattaaaaaagataagagtaat 29315934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 30887896 - 30887950
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  30887896 attaattagttttattaaaaaagataagagtaattgacaaa-ggtataattgacaa 30887950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 45083036 - 45083091
Alignment:
Q  174 ttagttttccaaatatatattattaattagttttattgaaaaagataagagtaatt 229  Q
    ||||||||||||||| ||   |||||||||||||||||||||||||||||||||||    
T  45083036 ttagttttccaaatacattacattaattagttttattgaaaaagataagagtaatt 45083091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 1530603 - 1530680
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||| ||| |||||| |||  |||||| ||||||||||||||| ||||||||||||||||||   ||||||||||||    
T  1530603 tttaggttttcaaatagatagcattaatcagttttattgaaaaaaataagagtaattgacaaaatgtataattgacaa 1530680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 2742941 - 2743009
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    |||| |||| |||| ||||||||||  |||||||||||||||||||||| |||| | ||||||||||||    
T  2742941 caaactttaatttttcaaatatatagcattaattagttttattgaaaaatataaaaataattgacaaat 2743009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 41411430 - 41411546
Alignment:
Q  127 aattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagta 226  Q
    ||||| |||||||||||||||||||||||||||         ||| ||||||||| ||||| ||||   |||||||||||| ||||||||||||||||||    
T  41411430 aatttaaagataacaagaaacaaactttgttttaaaaaa---aaactttagtttttcaaatttataactttaattagtttt-ttgaaaaagataagagta 41411525  T
Q  227 attgacaaatgatataattga 247  Q
    ||  ||||| | |||||||||    
T  41411526 atcaacaaagggtataattga 41411546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 36682633 - 36682579
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaat 228  Q
    ||||||||| ||||||||||  |||||||||||||||| |||||||||||||||||    
T  36682633 tttagtttttcaaatatatac-attaattagttttattaaaaaagataagagtaat 36682579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 247
Target Start/End: Complemental strand, 40557319 - 40557213
Alignment:
Q  136 ataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    ||||||||||||||||||||||||         ||| ||||||||| ||||| ||||  |||||||||||| |||||||||||||||||||||  |||||    
T  40557319 ataacaagaaacaaactttgttttaaaaa----aaactttagtttttcaaatttataacattaattagttt-attgaaaaagataagagtaatcaacaaa 40557225  T
Q  236 tgatataattga 247  Q
     | |||||||||    
T  40557224 gggtataattga 40557213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 3443733 - 3443815
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||| ||||||||||  |||||||||||| ||||||||| ||||||  ||||| |||  | ||||||||||||    
T  3443733 caaactttagtttttcaaatatatagcattaattagtttgattgaaaaaaataagaacaattgtcaacgggtataattgacaa 3443815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 34039013 - 34038904
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||||||||||||||||||||||||||| |||        |||| |||| ||||  |||||||||  ||||| || ||||||||||||||||||   |    
T  34039013 aaattttaagataacaagaaacaaactttg-tttaaaaaaaacaaactttaattttttaaatatataacattaactatttttattgaaaaagataaatat 34038915  T
Q  226 aattgacaaat 236  Q
    |||||||||||    
T  34038914 aattgacaaat 34038904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 4418910 - 4418971
Alignment:
Q  190 atattattaattagttttattg-aaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||| ||||| | ||||||    
T  4418910 atatcattaattagttttattgaaaaaaaataagagtaattgacaaaggatatgactgacaa 4418971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 1358855 - 1358887
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttt 158  Q
    |||||||||||||||||||||||||||||||||    
T  1358855 aaattttaagataacaagaaacaaactttgttt 1358887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 44666215 - 44666251
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattga 231  Q
    |||||||||||||||||||||||||||||| ||||||    
T  44666215 attaattagttttattgaaaaagataagagaaattga 44666251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 1358941 - 1358996
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||| |||||||||| ||||||||||| ||| |  |||||||||||    
T  1358941 attaattagttttaatgaaaaagattagagtaattgataaagggcataattgacaa 1358996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 1358732 - 1358777
Alignment:
Q  87 ttatttttctcttggagttgttcttttactttgcacttgaaatttt 132  Q
    ||||||||||||  || |||||||||||||||||||||||| ||||    
T  1358732 ttatttttctctcagatttgttcttttactttgcacttgaattttt 1358777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 11087199 - 11087146
Alignment:
Q  177 gttttccaaatatatattattaattagttttattgaaaaagataagagtaattg 230  Q
    ||||| |||||| | | ||||||||| ||||||||| |||||||||||||||||    
T  11087199 gtttttcaaatagacaatattaattaattttattgagaaagataagagtaattg 11087146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 27231899 - 27231867
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttt 158  Q
    |||||| ||||||||||||||||||||||||||    
T  27231899 aaatttaaagataacaagaaacaaactttgttt 27231867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 28226667 - 28226545
Alignment:
Q  127 aattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagta 226  Q
    |||||||||||||||||||||||||||||||           ||| ||||||||| ||||||||||  |||||||||||||||||||||||||||||| |    
T  28226667 aattttaagataacaagaaacaaactttgttaaaaataaaa-aaactttagtttttcaaatatataacattaattagttttattgaaaaagataagagca 28226569  T
Q  227 attgacaaatgatataattgacaa 250  Q
    ||||||||| | ||||||||||||    
T  28226568 attgacaaaaggtataattgacaa 28226545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 2273520 - 2273602
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||   ||||||||||||    
T  2273520 caaactttagttttccaaatatatagcattaataagttttattgaaaaagataagagtaattgacaaagcgtataattgacaa 2273602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 35793075 - 35793200
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaatt-ttagttttccaaatatatattattaattagttttattgaaaaagataagag 224  Q
    |||||| |||||||||||||||||||||||||||         |||   ||||||||||||||| | |  ||||||||||||||||||||||||||||||    
T  35793075 aaatttgaagataacaagaaacaaactttgttttaagaaaaaaaaaacattagttttccaaatagacaacattaattagttttattgaaaaagataagag 35793174  T
Q  225 taattgacaaatgatataattgacaa 250  Q
    ||||||||||| | ||||||||||||    
T  35793175 taattgacaaagggtataattgacaa 35793200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 15643409 - 15643335
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| ||| | |||||||||    
T  15643409 tttagttttccaaatatatagcattaattagttttattgaaaaaaataagagtaattgataaagggtataattga 15643335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 2798684 - 2798619
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgaca 233  Q
    |||| ||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  2798684 caaactttagtttttcaaatatatagcattaattagttttattgaaaaagataagagtaattgaca 2798619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 7809208 - 7809285
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||| |||| ||| ||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||    
T  7809208 tttagttttcctaatacatagtattaattagttttatttaaaaagataaaagtaattgagaaatggtataattgacaa 7809285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 37124248 - 37124171
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||| | |  ||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||    
T  37124248 tttagttttccaaatagagagcattaattagttttattgaaaaagataagagtaatttacaaagggtataattgacaa 37124171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 24394233 - 24394312
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||| ||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||| |||||||| | |||||||||    
T  24394233 caaactttagttttccaaatatatatcattagttagttttattcaaaaatataagagtagttgacaaagggtataattga 24394312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 43368859 - 43368782
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||   ||||||||||||||| |||||||||| ||||||||||||| | ||| ||||||||    
T  43368859 tttagttttccaaatatataactttaattagttttatttaaaaagataaaagtaattgacaaagggtatgattgacaa 43368782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 10534976 - 10535098
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| |||||||||||||||||||| ||||||         ||| |||| |||| |||||| ||   ||||||||||||||||||||||||||||||     
T  10534976 aaatttgaagataacaagaaacaaactatgttttaaaaaaa--aaactttaatttttcaaatagattacattaattagttttattgaaaaagataagagg 10535073  T
Q  226 aattgacaaatgatataattgacaa 250  Q
    |||||||||| | ||||||||||||    
T  10535074 aattgacaaaaggtataattgacaa 10535098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 16196905 - 16196783
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| |||| |||||||||||||||||||||         |||| ||||||||||||| || |||  || ||||||||||||||||||||||||||||    
T  16196905 aaatttgaagaaaacaagaaacaaactttgttt-aataaaaacaaactttagttttccaattagataacatcaattagttttattgaaaaagataagagt 16196807  T
Q  226 aattgacaaatgatataattgacaa 250  Q
    || ||||||| | ||||||||||||    
T  16196806 aa-tgacaaagggtataattgacaa 16196783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 3835674 - 3835754
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||||||||||||||| ||| ||||||||||||  |||||||||||||||||| ||||||| | | ||||||||||||    
T  3835674 caaactttagttttccaaatagataatattaattagtt--attgaaaaagataagagtgattgacagagggtataattgacaa 3835754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 4962944 - 4963023
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||| ||||||||| ||||||||||  | |||||||||||||||||||| |||||| ||||||||||| | |||||||||    
T  4962944 caaactttagtttttcaaatatatagcactaattagttttattgaaaaatataagaataattgacaaaaggtataattga 4963023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 25290699 - 25290620
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||| ||||||||| ||||||||    |||||||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  25290699 caaactttagtttttcaaatatacgacattaattagttttattgaaaaatataagaataattgacaaaagatataattga 25290620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 10026227 - 10026292
Alignment:
Q  173 tttagttttccaaatatatatta--ttaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    ||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||    
T  10026227 tttagtttttcaaatatatataacattaattagttttattgaaaaagataagagtaattaacaaat 10026292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 4567390 - 4567313
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||| || |||  ||||||||||||||||||||||||||| |||| |||||||| | |||||| |||||    
T  4567390 tttagttttccaactagatagcattaattagttttattgaaaaagataaaagtagttgacaaagggtataatcgacaa 4567313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 36412806 - 36412922
Alignment:
Q  127 aattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagta 226  Q
    ||||| |||||||||||||||||||||||||||         ||| ||||||||| ||||| ||||  ||||||||||||| ||||||||||||||||||    
T  36412806 aatttaaagataacaagaaacaaactttgttttaaaaaa---aaactttagtttttcaaatttataacattaattagtttt-ttgaaaaagataagagta 36412901  T
Q  227 attgacaaatgatataattga 247  Q
    ||  ||||| | |||||||||    
T  36412902 ataaacaaagggtataattga 36412922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 39430609 - 39430676
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    |||| ||||||||| ||||||||||  | |||||||||||||||||||| |||||| |||||||||||    
T  39430609 caaactttagtttttcaaatatatagcactaattagttttattgaaaaatataagaataattgacaaa 39430676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 39599702 - 39599777
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattg-aaaaagataagagtaattgacaaatgatataattga 247  Q
    ||||||||| ||||||||||  ||||||||||||||| | |||||||||||||||||||| ||| | |||||||||    
T  39599702 tttagtttttcaaatatatagcattaattagttttatcgaaaaaagataagagtaattgataaagggtataattga 39599777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 1752595 - 1752657
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattg 230  Q
    |||| |||||||||| ||||| ||| ||||||||||||| |||||||||||||| ||||||||    
T  1752595 caaactttagttttctaaatagataatattaattagtttgattgaaaaagataaaagtaattg 1752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 12394202 - 12394114
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaa------aagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||||||||||||||| | | |||||||||||||||| ||||      ||||||||||| || |||||||||||||||||||||    
T  12394202 caaactttagttttccaaatagacagtattaattagttttatcgaaaaaaaataagataagagtgatcgacaaatgatataattgacaa 12394114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 39427481 - 39427421
Alignment:
Q  168 caaattttagttttccaaatatatattattaatt-agttttattgaaaaagataagagtaa 227  Q
    |||| ||||||||||||||||||||  ||||||| ||||||||| ||||||||||||||||    
T  39427481 caaactttagttttccaaatatatagcattaatttagttttattaaaaaagataagagtaa 39427421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 4678477 - 4678434
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaa 216  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  4678477 tttagttttccaaatatataacattaattagttttattgaaaaa 4678434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 39617596 - 39617541
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||| |||||||||||||||||| ||||||||||||| | ||||| ||||||    
T  39617596 attaattaattttattgaaaaagataaaagtaattgacaaaaggtataactgacaa 39617541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 44550083 - 44550028
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||| |||||||||||||||||||||| ||||| || || ||||||    
T  44550083 attaattagttttaatgaaaaagataagagtaattgagaaatggtacaagtgacaa 44550028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 39247324 - 39247379
Alignment:
Q  194 tattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||||| ||||||||||| |||||| | || |||||||||    
T  39247324 tattaattagttttattgaaaaa-ataagagtaatggacaaagggtacaattgacaa 39247379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 43368924 - 43368892
Alignment:
Q  127 aattttaagataacaagaaacaaactttgtttt 159  Q
    |||||||||||||||||||||||||||||||||    
T  43368924 aattttaagataacaagaaacaaactttgtttt 43368892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 14735092 - 14735143
Alignment:
Q  199 attagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||||||||||||| | ||||  ||||| ||||||    
T  14735092 attagttttattgaaaaagataagagtaattaagaaatagtataaatgacaa 14735143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 39432666 - 39432603
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    ||||||||| ||||||||||  | |||| ||||||||||||||| |||| | ||||||||||||    
T  39432666 tttagtttttcaaatatatagcactaataagttttattgaaaaatataaaaataattgacaaat 39432603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 14771449 - 14771499
Alignment:
Q  200 ttagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||| |||||||||| |||||| ||||||||||| | ||||||||||||    
T  14771449 ttagttatattgaaaaatataagaataattgacaaagggtataattgacaa 14771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 15221901 - 15221951
Alignment:
Q  200 ttagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||| |||||||||| |||||| ||||||||||| | ||||||||||||    
T  15221901 ttagttatattgaaaaatataagaataattgacaaagggtataattgacaa 15221951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 1719906 - 1719959
Alignment:
Q  195 attaattagttttattgaaaaaga-taagagtaattgacaaatgatataattga 247  Q
    |||||| ||||||||||||||||| ||||| ||| ||| |||||||||||||||    
T  1719906 attaataagttttattgaaaaagagtaagaataactgagaaatgatataattga 1719959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 8614843 - 8614903
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaa 234  Q
    ||||||||| |||||| |||  | |||||||||||||| ||||| |||||||||||||||||    
T  8614843 tttagtttttcaaatagataacaataattagttttatt-aaaaaaataagagtaattgacaa 8614903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 37072425 - 37072454
Alignment:
Q  202 agttttattgaaaaagataagagtaattga 231  Q
    ||||||||||||||||||||||||||||||    
T  37072425 agttttattgaaaaagataagagtaattga 37072454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 2271870 - 2271902
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttt 158  Q
    |||||||| ||||||||||||||||||||||||    
T  2271870 aaattttaggataacaagaaacaaactttgttt 2271902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 3835611 - 3835643
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttt 158  Q
    |||||| ||||||||||||||||||||||||||    
T  3835611 aaatttgaagataacaagaaacaaactttgttt 3835643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 10026158 - 10026190
Alignment:
Q  127 aattttaagataacaagaaacaaactttgtttt 159  Q
    |||||||||||||||||||||| ||||||||||    
T  10026158 aattttaagataacaagaaacagactttgtttt 10026190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 27723342 - 27723302
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    |||||||||||||| |||||||||||| ||||||| |||||    
T  27723342 attaattagttttactgaaaaagataaaagtaattaacaaa 27723302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 37124398 - 37124370
Alignment:
Q  104 ttgttcttttactttgcacttgaaatttt 132  Q
    |||||||||||||||||||||||||||||    
T  37124398 ttgttcttttactttgcacttgaaatttt 37124370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 41690052 - 41690024
Alignment:
Q  104 ttgttcttttactttgcacttgaaatttt 132  Q
    |||||||||||||||||||||||||||||    
T  41690052 ttgttcttttactttgcacttgaaatttt 41690024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 46672046 - 46672094
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaa 216  Q
    |||| ||||||| |||||||||||| ||||||||| ||||||| |||||    
T  46672046 caaactttagttctccaaatatatagtattaattaattttatttaaaaa 46672094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 25841940 - 25842022
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||| | ||| ||||||||    
T  25841940 caaattttagttttccaaatatatagcattaattagttttattgaaaaatataagattaattgacaaagggtatgattgacaa 25842022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 633295 - 633368
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattg 246  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  633295 tttagttttccaaatatataacattaattagttttattgaaaatgataagagtaattgacaaaggatgtaattg 633368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 25342389 - 25342466
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||  |||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||    
T  25342389 tttagttttccaaatatataacattaattagttttattaaaaacgataaaagtaattgacaaaggatataattgacaa 25342466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 19578440 - 19578329
Alignment:
Q  139 acaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatga 238  Q
    |||||||||||||||||||||        |||| ||| |||||| |||||||||  |||||||||||||||||||||||| ||||| |||||||||| |     
T  19578440 acaagaaacaaactttgttttaaaaaaaacaaacttttgttttctaaatatataacattaattagttttattgaaaaagacaagagcaattgacaaaggg 19578341  T
Q  239 tataattgacaa 250  Q
    ||||||||||||    
T  19578340 tataattgacaa 19578329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 5493626 - 5493550
Alignment:
Q  174 ttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||| |||||| | |  ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  5493626 ttagtttttcaaatagacaacattaattagttttattgaaaaagataagagtaattgacaaagggtataattgacaa 5493550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 27264182 - 27264110
Alignment:
Q  178 ttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||| | |||  |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  27264182 ttttccaaaaagatagcattaattaattttattgaaaaagataagagtaattgacaaatggtataattgacaa 27264110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 45759965 - 45760041
Alignment:
Q  174 ttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||| |||||| |||  |||||||||||||||||| |||||||||||||||||||||| | ||||||||||||    
T  45759965 ttagtttttcaaatagatagcattaattagttttattgagaaagataagagtaattgacaaagggtataattgacaa 45760041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 375868 - 375743
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatatt--attaattagttttattgaaaaagataaga 223  Q
    |||||||| ||||||||||||||||||||||||         |||| |||| |||||||||||||||    |||||||| ||||||| ||||||||||||    
T  375868 aaattttaggataacaagaaacaaactttgttt-aaaaaaaacaaaatttaattttccaaatatataaagcattaattaattttattaaaaaagataaga 375770  T
Q  224 gtaattgacaaatgatataattgacaa 250  Q
    |||||||||||| ||||||||| ||||    
T  375769 gtaattgacaaaagatataattaacaa 375743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 9588824 - 9588745
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||| ||||||||||||||||||||  ||||||||||||| ||||||||||||  ||||||||||||| | |||||||||    
T  9588824 caaactttagttttccaaatatataacattaattagtttttttgaaaaagatattagtaattgacaaagggtataattga 9588745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 45646679 - 45646597
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||| |||||| |||  |||||||||||||||||||||||| || ||||||||||||| | ||||||||||||    
T  45646679 caaactttagtttttcaaatagatagcattaattagttttattgaaaaagaaaaaagtaattgacaaagggtataattgacaa 45646597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 7259718 - 7259779
Alignment:
Q  175 tagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    ||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||    
T  7259718 tagttttccaaatatatagcattaattagttttattgaaaaatataagaataattgacaaat 7259779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 19234007 - 19234076
Alignment:
Q  178 ttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||||||||||||||  |||||||  |||||||||||||||||||||||||||||||| | |||||||||    
T  19234007 ttttccaaatatatagcattaattttttttattgaaaaagataagagtaattgacaaagggtataattga 19234076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 21934489 - 21934548
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    |||| ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  21934489 caaactttagttttccaaatatatagcattaattagttttattaaaaaagataagagtaa 21934548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 296509 - 296431
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattg-aaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||  || |||||||||||| | |||||||||||||||||||||||| | ||||| ||||||    
T  296509 tttagttttccaaatatatagcataaattagttttatagaaaaaagataagagtaattgacaaagggtataactgacaa 296431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 20841393 - 20841318
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||| |||||| |||  |||||||||||||||||||||| |||  ||||||||||||||| ||||||||||||    
T  20841393 tttagtttttcaaatagatagcattaattagttttattgaaaaaaata--agtaattgacaaatggtataattgacaa 20841318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 2440662 - 2440738
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||| ||||||||||| |||||||| |||||||| ||||||||| | ||||||||||| | ||||||||||||    
T  2440662 tttagtttttcaaatatatataattaattaattttattg-aaaagataaaactaattgacaaagggtataattgacaa 2440738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 34668756 - 34668679
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||||| |||  |||||||||||||||| ||||| | || ||||||||||||| | ||||||||||||    
T  34668756 tttagttttccaaatagatagcattaattagttttattcaaaaaaaaaaaagtaattgacaaagggtataattgacaa 34668679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 54675151 - 54675266
Alignment:
Q  127 aattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagta 226  Q
    ||||| |||||||||||||||||||||||||||         ||| ||||||||| ||||| ||||  ||||||||||||| ||||||||||||||||||    
T  54675151 aatttaaagataacaagaaacaaactttgttttaaaaa----aaactttagtttttcaaatttataacattaattagtttt-ttgaaaaagataagagta 54675245  T
Q  227 attgacaaatgatataattga 247  Q
    ||  ||||| | |||||||||    
T  54675246 atcaacaaagggtataattga 54675266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 1272489 - 1272438
Alignment:
Q  184 aaatatatattattaattagttttattgaaaaagataagagtaattgacaaa 235  Q
    |||||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  1272489 aaatatatagcattaattagttttattgaaaaatataagagtaattgacaaa 1272438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 20141043 - 20141098
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||    
T  20141043 attaatttgttttattgaaaaagataagagtaattgagaaaaggtataattgacaa 20141098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 37030985 - 37031055
Alignment:
Q  180 ttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||| |||  ||||||||||||||||||||||| ||| |||||||| |||| | ||||||||||||    
T  37030985 ttccaaatagatagcattaattagttttattgaaaaagctaaaagtaattggcaaagggtataattgacaa 37031055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 45667576 - 45667467
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    ||||||||||| |||||||| ||||||||||||         |||| ||| |||||||||||| |||  |||||||| |||||||||||||||| | |||    
T  45667576 aaattttaagaaaacaagaatcaaactttgttt-aaaaaaaacaaactttcgttttccaaatagatagcattaattaattttattgaaaaagatcaaagt 45667478  T
Q  226 aattgacaaat 236  Q
    |||||||||||    
T  45667477 aattgacaaat 45667467  T

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Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 2093850 - 2093773
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||| |||||| |||  |||||||| ||| | |||||||||||| ||||||||||||| | ||||||||||||    
T  2093850 tttagtttttcaaatagatagcattaattaatttgactgaaaaagataaaagtaattgacaaagggtataattgacaa 2093773  T

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Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 19187671 - 19187736
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgaca 233  Q
    |||| |||| |||| ||||||||||| |||||||||||||||||||||| ||||| ||||| ||||    
T  19187671 caaactttaatttttcaaatatatatcattaattagttttattgaaaaaaataagtgtaatcgaca 19187736  T

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Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 23272132 - 23272051
Alignment:
Q  169 aaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||| ||||  |||||||||  ||||||| ||||||||||||||||||||| ||||||| |||   ||||||||||||    
T  23272132 aaattttaattttttaaatatatagcattaatttgttttattgaaaaagataagaataattgagaaaatgtataattgacaa 23272051  T

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Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 1405279 - 1405224
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||    
T  1405279 attaattagtgttatttaaaaatattagagtaattgacaaatggtataattgacaa 1405224  T

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Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 10614652 - 10614597
Alignment:
Q  195 attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||||||||||||| |||||||||||||||||||||| ||||| || || ||||||    
T  10614652 attaattagttttaatgaaaaagataagagtaattgagaaatggtacaagtgacaa 10614597  T

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Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 29556540 - 29556587
Alignment:
Q  200 ttagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||    
T  29556540 ttagttttattgaaaaagataagagtaattgagaaattgtataattga 29556587  T

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Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 38751096 - 38751151
Alignment:
Q  172 ttttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    |||||||||||||||||||||  |||| ||||||||||| ||||||| ||||||||    
T  38751096 ttttagttttccaaatatatagcattacttagttttattaaaaaagacaagagtaa 38751151  T

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Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 16237604 - 16237662
Alignment:
Q  178 ttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    ||||||||||| |||  ||||||||| |||||||||||| |||| ||||||||||||||    
T  16237604 ttttccaaatagatagcattaattagctttattgaaaaatataatagtaattgacaaat 16237662  T

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Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 27817495 - 27817414
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| ||||||||| |||||| | |  ||| ||||||||||||||||||||||| | ||||||||||| | ||||||||||||    
T  27817495 caaactttagtttttcaaatagagagaattcattagttttattgaaaaagataa-aataattgacaaaaggtataattgacaa 27817414  T

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Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 9588888 - 9588855
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgtttt 159  Q
    ||||||||||||||||||||||||||||||||||    
T  9588888 aaattttaagataacaagaaacaaactttgtttt 9588855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 15638453 - 15638485
Alignment:
Q  127 aattttaagataacaagaaacaaactttgtttt 159  Q
    |||||||||||||||||||||||||||||||||    
T  15638453 aattttaagataacaagaaacaaactttgtttt 15638485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 23772254 - 23772312
Alignment:
Q  173 tttagttttccaaatatatatta--ttaattagttttattgaaaaagataagagtaatt 229  Q
    ||||||||| ||||||||||| |  || |||||||||||||||||| ||||||||||||    
T  23772254 tttagtttttcaaatatatataacatttattagttttattgaaaaatataagagtaatt 23772312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 44940873 - 44940932
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    |||| |||| |||| ||||||||||  |||||||||||||||| |||||||||| |||||    
T  44940873 caaactttaatttttcaaatatatagcattaattagttttattaaaaaagataaaagtaa 44940932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 3751538 - 3751492
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaa 214  Q
    |||| ||||| ||||||||||||||  ||||||||||||||||||||    
T  3751538 caaactttaggtttccaaatatataacattaattagttttattgaaa 3751492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 2093905 - 2093872
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgtttt 159  Q
    |||||| |||||||||||||||||||||||||||    
T  2093905 aaatttgaagataacaagaaacaaactttgtttt 2093872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 1272661 - 1272633
Alignment:
Q  104 ttgttcttttactttgcacttgaaatttt 132  Q
    |||||||||||||||||||||||||||||    
T  1272661 ttgttcttttactttgcacttgaaatttt 1272633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 2599180 - 2599148
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttt 158  Q
    |||||| ||||||||||||||||||||||||||    
T  2599180 aaatttaaagataacaagaaacaaactttgttt 2599148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 3751586 - 3751554
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttt 158  Q
    |||||| ||||||||||||||||||||||||||    
T  3751586 aaatttaaagataacaagaaacaaactttgttt 3751554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 21915672 - 21915644
Alignment:
Q  104 ttgttcttttactttgcacttgaaatttt 132  Q
    |||||||||||||||||||||||||||||    
T  21915672 ttgttcttttactttgcacttgaaatttt 21915644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 25485886 - 25485838
Alignment:
Q  169 aaattttagttttccaaatatatattattaattagttttattgaaaaag 217  Q
    |||||| | |||||||||||||||  || ||||||||||||||||||||    
T  25485886 aaatttgaattttccaaatatataacatcaattagttttattgaaaaag 25485838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 37030938 - 37030970
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttt 158  Q
    |||||| ||||||||||||||||||||||||||    
T  37030938 aaatttgaagataacaagaaacaaactttgttt 37030970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 14994 - 14918
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||| || |||||||||||| | ||||||||||||    
T  14994 tttagttttccaaatatataacattaattagttttattg-aaaagatgagggtaattgacaaaaggtataattgacaa 14918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 15273 - 15317
Alignment:
Q  190 atattattaattagttttattgaaaaagataagagtaattgacaa 234  Q
    |||| |||||||||||||||||||||| ||||||||| |||||||    
T  15273 atatcattaattagttttattgaaaaaaataagagtagttgacaa 15317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 6403 - 6477
Alignment:
Q  173 tttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattga 247  Q
    ||||||||||||||||||||  | |||||| ||||||||||||| |||  ||||||||||||| |||||||||||    
T  6403 tttagttttccaaatatataacaataattaattttattgaaaaacatagaagtaattgacaaaggatataattga 6477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 503 - 399
Alignment:
Q  126 aaattttaagataacaagaaacaaactttgttttnnnnnnnncaaattttagttttccaaatatatattattaattagttttattgaaaaagataagagt 225  Q
    |||||| ||||| |||||||||||| ||||||||        |||| |||||||||| |||||||||  |||||||||||||||||||||  |||||| |    
T  503 aaatttgaagatgacaagaaacaaattttgttttaaaa----caaactttagttttc-aaatatataacattaattagttttattgaaaattataagaat 409  T
Q  226 aattgacaaa 235  Q
    ||||||||||    
T  408 aattgacaaa 399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 952 - 870
Alignment:
Q  168 caaattttagttttccaaatatatattattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaa 250  Q
    |||| |||| |||||||| || |||  || ||||||||| |||||||||||||| ||||||||| ||| | ||||||||||||    
T  952 caaactttaattttccaactagatagcatcaattagtttcattgaaaaagataaaagtaattgagaaaaggtataattgacaa 870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 14872 - 14823
Alignment:
Q  178 ttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    |||| ||||| |||| ||||||||||||| |||||||||||||| |||||    
T  14872 tttttcaaatgtataatattaattagtttgattgaaaaagataaaagtaa 14823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 23707 - 23658
Alignment:
Q  178 ttttccaaatatatattattaattagttttattgaaaaagataagagtaa 227  Q
    |||| ||||| |||| ||||||||||||| |||||||||||||| |||||    
T  23707 tttttcaaatgtataatattaattagtttgattgaaaaagataaaagtaa 23658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 46598 - 46651
Alignment:
Q  183 caaatatatattattaattagttttattgaaaaagataagagtaattgacaaat 236  Q
    ||||||||||  |||||||| ||||||||||||  |||||| ||||||||||||    
T  46598 caaatatatagcattaattaattttattgaaaattataagaataattgacaaat 46651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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