View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_72 (Length: 249)
Name: NF1910_low_72
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 11539655 - 11539891
Alignment:
| Q |
1 |
tatggatgttttccctcttttttcttatgttttttctgttatacatacactagtaaagtaaagatattgtgtaagattgcgcgagtgtggggagataatg |
100 |
Q |
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| T |
11539655 |
tatggatgttttccctcttttttcttatgttttttctgttatacatacactagtaaagtaaagatattgtgtaagattgcgcgagtgtggggagataatg |
11539754 |
T |
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| Q |
101 |
gccggaaaaagagaaatgaaatttcgttgcatgtaattagtgaatggcttttcttaaactaaacgaccaattgacagtagattgattaatcacaatcatt |
200 |
Q |
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| T |
11539755 |
gccggaaaaagagaaatgaaatttcgttgcatgtaattagtgaatggcttttcttaaactaaacgaccaattgaccgtagattgattaatcacaatcatt |
11539854 |
T |
|
| Q |
201 |
ctttacagacccgaagaactgagtttcatagcacagg |
237 |
Q |
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| T |
11539855 |
ctttacagacccgaagaactgagtttcatagcacagg |
11539891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 34754915 - 34755095
Alignment:
| Q |
1 |
tatggatgttttccctcttttttcttatgttttttctgttatacatacactagtaaagtaaagatattgtgtaagattgcgcgagtgtggggagataatg |
100 |
Q |
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| T |
34754915 |
tatggatgttttccctcttttttcttatgttttttctgttatacatacactagtaaagtaaagatattgtgtaagattgcgcgagtgtggggagataatg |
34755014 |
T |
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| Q |
101 |
gccggaaaaagagaaatgaaatttcgttgcatgtaattagtgaatggcttttcttaaactaaacgaccaattgacagtaga |
181 |
Q |
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| T |
34755015 |
gccggaaaaagagaaatgaaatttcgttgcgtgtaattagtgaatggcttttcttaaactaaacgaccaattgaccgtaga |
34755095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 34755432 - 34755583
Alignment:
| Q |
86 |
tgtggggagataatggccggaaaaagagaaatgaaatttcgttgcatgtaattagtgaatggcttttcttaaactaaacgaccaattgacagtagattga |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34755432 |
tgtggggagataatggccggaaaaagagaaatgaaatttcgttgcgtgtaattagtgaatggcttttcttaaactaaacgaccaattgaccgtagattga |
34755531 |
T |
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| Q |
186 |
ttaatcacaatcattctttacagacccgaagaactgagtttcatagcacagg |
237 |
Q |
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| T |
34755532 |
ttaatcacaatcattctttacagacccgaagaactgagtttcatagcacagg |
34755583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34598738 - 34598982
Alignment:
| Q |
1 |
tatggatgttttccctcttttttcttatgttttttctgttatacata--------cactagtaaagtaaagatattgtgtaagattgcgcgagtgtgggg |
92 |
Q |
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| T |
34598738 |
tatggatgttttccctcttttttcttatgctttttctgttatgcatagttgcatacactagtaaagtaaagatattgtgtaagattgcgcgagtgtgggg |
34598837 |
T |
|
| Q |
93 |
agataatggccggaaaaagagaaatgaaatttcgttgcatgtaattagtgaatggcttttcttaaactaaacgaccaattgacagtagattgattaatca |
192 |
Q |
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||||||||| ||||| ||||| ||| |||||| ||| || |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
34598838 |
agataatggttggaaacagagacatggaatttcactgcgtgcaattagtgaatggcttttcttaaactaagcgaccaattgaccatagattgattaatca |
34598937 |
T |
|
| Q |
193 |
caatcattctttacagacccgaagaactgagtttcatagcacagg |
237 |
Q |
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||||||| ||| |||||||||||||||||||||| |||| |||| |
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| T |
34598938 |
caatcatattttgcagacccgaagaactgagtttcgtagcgcagg |
34598982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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