View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_74 (Length: 242)
Name: NF1910_low_74
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 51353946 - 51354147
Alignment:
| Q |
1 |
ccaatctaccacgcactatatacttttctttatacaattgcataagacacgct----aataatatatcatatacaaactccatttatttcacttcatcat |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51353946 |
ccaatctaccacgcactatatacttttctttatacaattgcataagacacgctcgctaattatatatcatatacaaactccatttatttcacttcatca- |
51354044 |
T |
|
| Q |
97 |
atcatatcatatctacacttgcagcagccgtatagtataatgatctataacaaccaacaactgtcacagacaaactctgtccaacatctcttttaagctt |
196 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51354045 |
----tatcatatctacacttgcagtagccgtatagtataatgatctataacaaccaacaactgtcattgacaaactctgtccaacatctcttttaagctt |
51354140 |
T |
|
| Q |
197 |
ccttcct |
203 |
Q |
| |
|
||||||| |
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|
| T |
51354141 |
ccttcct |
51354147 |
T |
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