View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_76 (Length: 239)
Name: NF1910_low_76
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_76 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 48279829 - 48279607
Alignment:
| Q |
8 |
tcatcaagaatggtgtgtctgctaccatggacataacataatagccaaataagaatagatnnnnnnntgtaacccgaacaaaaagacttacatccttatt |
107 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | |||||||||||||||||| |||||| ||||| |
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| T |
48279829 |
tcatcaagaatggtgtgtctgctaccctggacataa-----tagccaaataagaatagataaaaaaatataacccgaacaaaaagacctacatc-ttatt |
48279736 |
T |
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| Q |
108 |
gagagaagagcagtatctaccttttctgaagagaagaaagaagatgaaagttttcttagtaaccgcatctgccgtaccgcgccatcaacatagcacaacc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48279735 |
gagagaagagcagtatctaccttttctgaagagaagaaagaacatgaaagttttcttagtaaccgcatctgccgtaccgcgccatcaacatagcatgacc |
48279636 |
T |
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| Q |
208 |
accgccatctcctagttaaaaacttagcc |
236 |
Q |
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| T |
48279635 |
accgccatctcctagttaaaaacttagcc |
48279607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 40389673 - 40389451
Alignment:
| Q |
8 |
tcatcaagaatggtgtgtctgctaccatggacataacataatagccaaataagaatagatnnnnnnntgtaacccgaacaaaaagacttacatccttatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||||||||| ||| ||||| |
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| T |
40389673 |
tcatcaagaatggtgtgtctgctaccatggacataa-----tagccatataagaatagataaaaaaatgtaacccggacaaaaagacttatatc-ttatt |
40389580 |
T |
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| Q |
108 |
gagagaagagcagtatctaccttttctgaagagaagaaagaagatgaaagttttcttagtaaccgcatctgccgtaccgcgccatcaacatagcacaacc |
207 |
Q |
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| T |
40389579 |
gagagaagagcagtatctaccttttctgaagagaagaaagaacatgaaagttttcttagtaaccgcatctaccgtaccgcgccatcaacatagcatgacc |
40389480 |
T |
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| Q |
208 |
accgccatctcctagttaaaaacttagcc |
236 |
Q |
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| T |
40389479 |
accgccatcttctagttaaaaacttagcc |
40389451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 29633742 - 29633521
Alignment:
| Q |
8 |
tcatcaagaatggtgtgtctgctaccatggacataacataatagccaaataagaatagatnnnnnnntgtaacccgaacaaaaagacttacatccttatt |
107 |
Q |
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||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
29633742 |
tcatcaagaatgg-gtgtctgctaccatagacgtaa-----tagccaaataagaatagataaaaaaatgtaacccgaacaaaaagacttacatc-ttatt |
29633650 |
T |
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| Q |
108 |
gagagaagagcagtatctaccttttctgaagagaagaaagaagatgaaagttttcttagtaaccgcatctgccgtaccgcgccatcaacatagcacaacc |
207 |
Q |
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| T |
29633649 |
gagagaagaacaatatctgccttttctgaagagaagaaagaacatgaaagttttcttagtaaccgcatatgccgtaccgcgccatcaacatagcaggacc |
29633550 |
T |
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| Q |
208 |
accgccatctcctagttaaaaacttagcc |
236 |
Q |
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| T |
29633549 |
accgccatctcctagttaaaaacttagcc |
29633521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 83433 - 83211
Alignment:
| Q |
8 |
tcatcaagaatggtgtgtctgctaccatggacataacataatagccaaataagaatagatnnnnnnntgtaacccgaacaaaaagacttacatccttatt |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |
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| T |
83433 |
tcatcatgaatggtgtgtctgctaccatggacataa-----tagccaaataagaatagagaaaaaaatgtaacccgaacaaaaatacttacatc-ttatt |
83340 |
T |
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| Q |
108 |
gagagaagagcagtatctaccttttctgaagagaagaaagaagatgaaagttttcttagtaaccgcatctgccgtaccgcgccatcaacatagcacaacc |
207 |
Q |
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| T |
83339 |
gagagaagaacaatatctaccttttctgaagagaagaaagaacataaaagttttcttagtaaccgcatcttccgtaccacgccatcaacatagcatgacc |
83240 |
T |
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| Q |
208 |
accgccatctcctagttaaaaacttagcc |
236 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
83239 |
accgccatctcctagttaaaaacttagcc |
83211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 24564794 - 24564854
Alignment:
| Q |
106 |
ttgagagaagagcagtatctaccttttctgaa---gagaagaaagaagatgaaagttttct |
163 |
Q |
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| T |
24564794 |
ttgagagaagagcactatatacctttcctgaaatggagaagaaagaacatgaaagttttct |
24564854 |
T |
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