View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_8 (Length: 579)
Name: NF1910_low_8
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_8 |
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| [»] scaffold0535 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Complemental strand, 31033382 - 31032829
Alignment:
| Q |
18 |
agtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataaggaggaaaagacactatgaaaccaaaggagctc |
117 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
31033382 |
agtgtaaggaccattggtggaaagcacatctttaactgtcaagttcaagtcatggatgtctatgtaaggaggaaaagacactaagaaaccaaaggagctc |
31033283 |
T |
|
| Q |
118 |
caaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcatttattgagtgatctaaaggggtaaacatgactc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31033282 |
caaggacaaaaccaaaaggaagaactacctgatcccaaatgccaagagaatccgtctttgagagcatttattgagtgatctaaaggggtaaacatgactc |
31033183 |
T |
|
| Q |
218 |
atgtatgtacataaaagacaaaatcannnnnnngcatctccattagttctgnnnnnnntcattatatataaaattgatacacaaatttatcgtttttaca |
317 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
31033182 |
atgtatgtacataaaagacaaaatca-ttttttgcatctccattagttctgaaaaaaatcattatatat-aaattaatacacaaatttatcttttttaca |
31033085 |
T |
|
| Q |
318 |
tcaaaagaagaaaaactatgactaagtttctcaagtttgtttattttctgatgagcttgatttccacattttttgttgtaaggcacggtaactcaggtat |
417 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31033084 |
tcaaaagaagaaaaaatatgagtaagtttctcaagtttgtttattttctgatgagcttgatttccacattttttgttgtaaggcacggtaactcaggtat |
31032985 |
T |
|
| Q |
418 |
gacctttctctcatccttttcaaatttttgctttaccttatacatg-----------catatgttaatattggttacttctttgttatacattacagcat |
506 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31032984 |
gacctttctctcatccttttcaaatttttgctttacattatacatgcatttttaccccatatgttaatattgattacttctttgttatacattacagcat |
31032885 |
T |
|
| Q |
507 |
cacctaaatattgtatgcacggcgatgattgtaatattttgtgtcctaatcctttg |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31032884 |
cacctaaatattgtatgcacggcgatgattgtaatattttgtgtcctaatcctttg |
31032829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 288 - 437
Target Start/End: Original strand, 31027882 - 31028034
Alignment:
| Q |
288 |
aaattgatacacaaatttatcgtttttacatcaaaagaagaaaaac---tatgactaagtttctcaagtttgtttattttctgatgagcttgatttccac |
384 |
Q |
| |
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||||||||| | | ||||||| |||| |||||||||| ||||||| ||||| |||||||||||| ||| ||||| | ||| | ||||||||||| |
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| T |
31027882 |
aaattgatataaacatttatctttttaacatcaaaaggagaaaaaaaaatatgattaagtttctcaaatttttttatgctacgatcatcttgatttccat |
31027981 |
T |
|
| Q |
385 |
attttttgttgtaaggcacggtaactcaggtatgacctttctctcatcctttt |
437 |
Q |
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|||||||||||||||| | | | ||| ||||||||||||| || |||||||| |
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| T |
31027982 |
attttttgttgtaagggatgaaagctctggtatgacctttcactaatcctttt |
31028034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 41385951 - 41385766
Alignment:
| Q |
1 |
tgagagtacaaaatctgagtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataaggaggaaaagacacta |
100 |
Q |
| |
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||||||||||||| || ||||| |||| |||| || ||| ||||||| |||||||| | | |||||||||||||||||| |||||||||| ||| || |
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| T |
41385951 |
tgagagtacaaaacctaagtgtgaggaatattggtgtagatcacatctctaactgtcgaatgcaagtcgtggatgtctatttaaggaggaagggacctta |
41385852 |
T |
|
| Q |
101 |
tgaaaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcattt |
186 |
Q |
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||||| ||| |||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||| |||||||||||||||||| |
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| T |
41385851 |
tgaaatcaagggagctccaaggacaaaaccaaaatgaagaaatacatgatcccacacaccaagagaaaccgtctttgagagcattt |
41385766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 27849188 - 27849373
Alignment:
| Q |
1 |
tgagagtacaaaatctgagtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataaggaggaaaagacacta |
100 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||| |||| |||||||| ||||||||||| | |||||| || |||||||| || ||| || ||| ||| |
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| T |
27849188 |
tgagagtacaaaacctgagtgtgagggtcattggtggatagcacatccttaactgtcaactgcaagtcatgtatgtctatgtagggaacaatagatccta |
27849287 |
T |
|
| Q |
101 |
tgaaaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcattt |
186 |
Q |
| |
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||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| || ||||||||| ||||| |
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| T |
27849288 |
agaattcaagggagctccaaggacaaaaccaaaaggaagaattacctgatcccgcgcgccaagagaaaccatctttgagaacattt |
27849373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0535 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0535
Description:
Target: scaffold0535; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 2882 - 2718
Alignment:
| Q |
15 |
ctgagtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataaggaggaaaagacactatgaaaccaaaggag |
114 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||| |||| ||||||| ||| || || || ||||| || ||| || ||| ||| |||| ||| |||| |
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| T |
2882 |
ctgagtgtgtggaccattggtggagaggacatccctaacggtcaagtgcaaatcatgaatatctatgtagggaaaaatagagcctaagaaatcaagggag |
2783 |
T |
|
| Q |
115 |
ctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgag |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || | ||||| ||| || |||||||| |
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| T |
2782 |
ctccaaggacaaaaccaaaaggaagaactaccagatcctgcgcgccaagtgaaaccatctttgag |
2718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 24132288 - 24132452
Alignment:
| Q |
22 |
taaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataaggaggaaaagacactatgaaaccaaaggagctccaag |
121 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||| ||||||| ||| || || |||||||| || || || || ||| ||| |||| ||||||||||| |
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| T |
24132288 |
taaggaccattggtggagaggacatctctaatagtcaagtgcaaatcatgaatgtctatgtaggggacaatggagcctaagaagccaagggagctccaag |
24132387 |
T |
|
| Q |
122 |
gacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcattt |
186 |
Q |
| |
|
|||||||||||||||||||| |||| || |||| | ||||| ||| || ||||||||||||||| |
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| T |
24132388 |
gacaaaaccaaaaggaagaattaccagaacccgagcgccaagtgaaaccatctttgagagcattt |
24132452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 14292756 - 14292708
Alignment:
| Q |
104 |
aaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcc |
152 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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| T |
14292756 |
aaccaaaggagctccaagggcaagaccaaaaggaagaactaccggatcc |
14292708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 14308805 - 14308757
Alignment:
| Q |
104 |
aaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcc |
152 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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|
| T |
14308805 |
aaccaaaggagctccaagggcaagaccaaaaggaagaactaccggatcc |
14308757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 18346054 - 18345988
Alignment:
| Q |
111 |
ggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttg |
177 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||| | |||||||| || || |||||| |
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|
| T |
18346054 |
ggagctccaaggacaagaccaaaaagaagaactacctgatcccactcaccaagataaaccctctttg |
18345988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 45716455 - 45716502
Alignment:
| Q |
104 |
aaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatc |
151 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| |||| |
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|
| T |
45716455 |
aaccaaaggagctccaagggcaagaccaaaaggaagaactaccggatc |
45716502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 18900393 - 18900329
Alignment:
| Q |
122 |
gacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcattt |
186 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| |||||| || || ||||| ||||||||| |
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|
| T |
18900393 |
gacaagaccaaaaggaagaactacctgaacccgcacgccaagaaaaaccttctttcagagcattt |
18900329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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