View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_84 (Length: 235)
Name: NF1910_low_84
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_84 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 37211446 - 37211564
Alignment:
| Q |
1 |
agcaaatctataaggcacattcatatggaaattcaaatcaccatgcataaatacttcgccataatcttacactttgccaccaaattccacgagtaattgt |
100 |
Q |
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| T |
37211446 |
agcaaatctataaggcacattcatatggaaattcaaatcaccatgcataaatacttcgccataatcttacactttgccaccaaattccacgagtaattgt |
37211545 |
T |
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| Q |
101 |
tcaagtcacgcatgcatga |
119 |
Q |
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| T |
37211546 |
tcaagtcacgcatgcatga |
37211564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 37211690 - 37211788
Alignment:
| Q |
117 |
tgacatcttttactctttgagatgttttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatcacatattgctttcaact |
215 |
Q |
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| T |
37211690 |
tgacatcttttactctttgagatgttttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatcacatattgctttcaact |
37211788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 37202078 - 37202148
Alignment:
| Q |
3 |
caaatctataaggcacattcatatggaaattcaaatcaccatgcataaatacttcgccataatcttacactt |
74 |
Q |
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| T |
37202078 |
caaatctataaggc-cattcatatggaaattcaaatcactatgcataaatacttggctataatcttacactt |
37202148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 37217393 - 37217458
Alignment:
| Q |
138 |
atgttttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatcacata |
203 |
Q |
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| T |
37217393 |
atgtcttggtagactcatcatgcattctaaccaatctctttttccaatcagcctctttatcacata |
37217458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 37183081 - 37183115
Alignment:
| Q |
16 |
cacattcatatggaaattcaaatcaccatgcataa |
50 |
Q |
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| T |
37183081 |
cacattcatatggaaattcaaatcaccgtgcataa |
37183115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 37194213 - 37194247
Alignment:
| Q |
16 |
cacattcatatggaaattcaaatcaccatgcataa |
50 |
Q |
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| T |
37194213 |
cacattcatatggaaattcaaatcaccgtgcataa |
37194247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 414811 - 414696
Alignment:
| Q |
1 |
agcaaatctataaggcacattcatatggaaattcaaatcaccatgcataaatacttcgccataatcttacac-tttgccaccaaa-ttccacgagtaatt |
98 |
Q |
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||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| | |||||||||||| ||| | |||||| |||||| ||||| | |
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| T |
414811 |
agcaaatgtataaggcacattcatatgaagattcaaatcaccatgcataaatactttgttataatcttacacatttacgaccaaatttccacaagtaagt |
414712 |
T |
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| Q |
99 |
gttcaagtcacgcatg |
114 |
Q |
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|||||||||| ||||| |
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| T |
414711 |
gttcaagtcatgcatg |
414696 |
T |
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