View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_91 (Length: 225)
Name: NF1910_low_91
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_91 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37201891 - 37202115
Alignment:
| Q |
1 |
gcccaacaaagcataacaacacagctacttctagaacctcactagtgttctgaagaaacttaaattttccctcacaccatagagaaagaatggatttcct |
100 |
Q |
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| T |
37201891 |
gcccaacaaagcataacaacacagctacttctagaacctcactagtgttctgaagaaactttaattttccctcacaccatagagaaagaatgggtttcct |
37201990 |
T |
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| Q |
101 |
ataacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaatgatcaaccaggtcatcaaataaacaaatctataagg |
200 |
Q |
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| T |
37201991 |
ataacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaatgatcaaccaggtcatcaaataaacaaatctataagg |
37202090 |
T |
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| Q |
201 |
ccattcatatggaaattcaaatcac |
225 |
Q |
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| T |
37202091 |
ccattcatatggaaattcaaatcac |
37202115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 37217026 - 37217111
Alignment:
| Q |
101 |
ataacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaatgatcaaccaggtcatcaaataaa |
187 |
Q |
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| T |
37217026 |
ataacatgatggtaaatttgtttttaaa-aaatataccactcatctcatgcagacatttttagtgatcaatcaggtcaccaaataaa |
37217111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 37211417 - 37211486
Alignment:
| Q |
157 |
tttttaatgatcaaccaggtcatcaaataaacaaatctataaggc-cattcatatggaaattcaaatcac |
225 |
Q |
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| T |
37211417 |
ttttaaatgatcaatcaggttaacaaataagcaaatctataaggcacattcatatggaaattcaaatcac |
37211486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 37183009 - 37183068
Alignment:
| Q |
103 |
aacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaa |
163 |
Q |
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| T |
37183009 |
aacatgattgttaatttgttttaaa-taaatataccacttatctcatgcaagcatttttaa |
37183068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 37194141 - 37194200
Alignment:
| Q |
103 |
aacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaa |
163 |
Q |
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| T |
37194141 |
aacatgattgttaatttgttttaaa-taaatataccacttatctcatgcaagcatttttaa |
37194200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37211300 - 37211340
Alignment:
| Q |
1 |
gcccaacaaagcataacaacacagctacttctagaacctca |
41 |
Q |
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| T |
37211300 |
gcccaacaaagcataacaacacaactacttcaagaacctca |
37211340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 7527133 - 7527236
Alignment:
| Q |
97 |
tcctataacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaatgatcaaccaggtcatcaaataaacaaatctat |
196 |
Q |
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| T |
7527133 |
tcctataacatcatggttaatttgttttaaa-taaatataccacacacctcatgcaaacattattaatgatcaatcaggtcagcaaataagcaaatttat |
7527231 |
T |
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| Q |
197 |
aaggc |
201 |
Q |
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||||| |
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| T |
7527232 |
aaggc |
7527236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 225
Target Start/End: Complemental strand, 414899 - 414771
Alignment:
| Q |
97 |
tcctataacatgatggttaatttattttaaaataaatatagcactcatctcatgcaaacatttttaatgatcaacca-ggtcatcaaataaacaaatcta |
195 |
Q |
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|||||||||| ||||||||||| ||| ||||||||||| || |||||||||||||||||||||||||||||| || | ||||| ||| ||||| || |
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| T |
414899 |
tcctataacacaatggttaatttgttt--aaataaatataccaatcatctcatgcaaacatttttaatgatcaatcatgcccatcatttaagcaaatgta |
414802 |
T |
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| Q |
196 |
taaggc-cattcatatggaaattcaaatcac |
225 |
Q |
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| T |
414801 |
taaggcacattcatatgaagattcaaatcac |
414771 |
T |
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