View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19110_high_3 (Length: 273)

Name: NF19110_high_3
Description: NF19110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19110_high_3
NF19110_high_3
[»] chr8 (15 HSPs)
chr8 (10-256)||(6262074-6262320)
chr8 (139-233)||(6456117-6456211)
chr8 (169-229)||(6362116-6362176)
chr8 (169-229)||(6368891-6368951)
chr8 (169-229)||(7457972-7458032)
chr8 (169-229)||(7470374-7470434)
chr8 (118-229)||(6273391-6273502)
chr8 (169-255)||(6330783-6330869)
chr8 (175-229)||(6389879-6389933)
chr8 (118-224)||(6423097-6423203)
chr8 (169-233)||(6449680-6449744)
chr8 (169-224)||(6351231-6351286)
chr8 (169-255)||(6320321-6320407)
chr8 (178-218)||(6409131-6409171)
chr8 (175-229)||(6287699-6287753)
[»] chr2 (2 HSPs)
chr2 (118-244)||(42692108-42692234)
chr2 (118-240)||(42689618-42689740)
[»] chr5 (2 HSPs)
chr5 (141-233)||(9606272-9606364)
chr5 (178-233)||(9590626-9590681)
[»] chr7 (1 HSPs)
chr7 (118-224)||(46709125-46709231)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 6262074 - 6262320
Alignment:
Q  10 attatactcagtagtacctgcaatatgtaaaatatttgattttagtcgcgataaaataaatatcatttgatatgaacaaattttgcagagactaaaacaa 109  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262074 attatactcggtagtacctgcaatatgtaaaatatttgattttagtcgcgataaaataaatatcatttgatatgaacaaattttgcagagactaaaacaa 6262173  T
Q  110 aacacgtacctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262174 aacacgtacctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaag 6262273  T
Q  210 agctgaagcagtccagatgataatactgcaaacttgaatcaactctt 256  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  6262274 agctgaagcagtccatatgataatactgcaaacttgaatcaactctt 6262320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 6456117 - 6456211
Alignment:
Q  139 ctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataat 233  Q
    |||||||||||||||||||| |  ||  | |||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||    
T  6456117 ctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataat 6456211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 6362116 - 6362176
Alignment:
Q  169 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatga 229  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||    
T  6362116 cctccatacggatattgtccaaaattaactgctgcatgaagtgctgaagcaatccatatga 6362176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 6368891 - 6368951
Alignment:
Q  169 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatga 229  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  6368891 cctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 6368951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 7457972 - 7458032
Alignment:
Q  169 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatga 229  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  7457972 cctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 7458032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 7470374 - 7470434
Alignment:
Q  169 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatga 229  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  7470374 cctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 7470434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 229
Target Start/End: Original strand, 6273391 - 6273502
Alignment:
Q  118 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 217  Q
    ||||||| |||||||||||  || ||   |||||| ||||| |  ||| |||| || ||||||||||||||||||||||||||||||||||| |||||||    
T  6273391 cctttcttaggcattaatcttctgcttttagttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagctgcatgaagtgctgaag 6273490  T
Q  218 cagtccagatga 229  Q
    || |||| ||||    
T  6273491 caatccatatga 6273502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 6330783 - 6330869
Alignment:
Q  169 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataatactgcaaacttgaatcaactct 255  Q
    |||||||| |||||||| ||||||||||||||||||||| | ||||||||| |||| ||||  ||| ||||| ||| ||||||||||    
T  6330783 cctccatatggatattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatgaggatagtgcaagcttcaatcaactct 6330869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 6389879 - 6389933
Alignment:
Q  175 tacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatga 229  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  6389879 tacggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 6389933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 6423097 - 6423203
Alignment:
Q  118 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 217  Q
    |||||||||||||| |||| ||| ||   |||||| ||||| |  ||| | |||||||| || ||||||||||||||||||||||||||||| |||||||    
T  6423097 cctttctcaggcatgaatctcctgctcttagttggtcggttaaggatgtatcctccatatgggtattgtccaaaattaacagctgcatgaagtgctgaag 6423196  T
Q  218 cagtcca 224  Q
    || ||||    
T  6423197 caatcca 6423203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 6449680 - 6449744
Alignment:
Q  169 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataat 233  Q
    ||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||    
T  6449680 cctccgtaaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatataataat 6449744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 6351231 - 6351286
Alignment:
Q  169 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtcca 224  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||    
T  6351231 cctccatatggatattgtccgaaattaacagctgcatgaagtgctgaagcaatcca 6351286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 6320321 - 6320407
Alignment:
Q  169 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataatactgcaaacttgaatcaactct 255  Q
    |||||||| || ||||| ||||||||||||||||||||| | ||||||||| |||| ||||  ||| ||||| ||| ||||||||||    
T  6320321 cctccatatgggtattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatgaggatagtgcaagcttcaatcaactct 6320407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 6409131 - 6409171
Alignment:
Q  178 ggatattgtccaaaattaacagctgcatgaagagctgaagc 218  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  6409131 ggatattgtccaaaattaacagctgcatgaagtgctgaagc 6409171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 6287699 - 6287753
Alignment:
Q  175 tacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatga 229  Q
    |||||||||||||||||||||||||| |||||||| || |||||| |||| ||||    
T  6287699 tacggatattgtccaaaattaacagccgcatgaagtgccgaagcaatccatatga 6287753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 42692108 - 42692234
Alignment:
Q  118 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 217  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||| |||||||| || | ||| ||||||||||||||||||||||||||||||||||    
T  42692108 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcatgaagagctgaag 42692207  T
Q  218 cagtccagatgataatactgcaaactt 244  Q
    || |||| |||| | || |||||||||    
T  42692208 caatccatatgacagtagtgcaaactt 42692234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 42689740 - 42689618
Alignment:
Q  118 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 217  Q
    |||| |||||| | |||||  ||||| | |||||| |||||||  || ||||| || || |||||||||||||||||||||||||| || || |||||||    
T  42689740 ccttcctcaggaagtaatcttctactgatagttgggcggtttagaataaaaccgccgtaaggatattgtccaaaattaacagctgcgtggagggctgaag 42689641  T
Q  218 cagtccagatgataatactgcaa 240  Q
    | ||||| ||||| ||| |||||    
T  42689640 ccgtccatatgatgatagtgcaa 42689618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 9606364 - 9606272
Alignment:
Q  141 actaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataat 233  Q
    |||||| |||||||||||||  ||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  9606364 actaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataat 9606272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 9590681 - 9590626
Alignment:
Q  178 ggatattgtccaaaattaacagctgcatgaagagctgaagcagtccagatgataat 233  Q
    |||||||||||||| |||||||| ||||||||||| | || |||||| ||||||||    
T  9590681 ggatattgtccaaagttaacagcagcatgaagagcaggagtagtccatatgataat 9590626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 46709125 - 46709231
Alignment:
Q  118 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 217  Q
    |||||||||||||| ||||| | ||| |  ||||||||||||  |  | ||||| || | |||||||||||||| || ||||||||||| ||||||||||    
T  46709125 cctttctcaggcatgaatcggcgacttattgttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaag 46709224  T
Q  218 cagtcca 224  Q
    || ||||    
T  46709225 caatcca 46709231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University