View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19110_low_1 (Length: 463)
Name: NF19110_low_1
Description: NF19110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19110_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 12 - 446
Target Start/End: Original strand, 51547990 - 51548424
Alignment:
| Q |
12 |
aggagcagagaagcatcaagcagttgcattaagagtgaatgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgtt |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51547990 |
aggaccagagaagcatcaagcagttgcattaagagtgaacgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgtt |
51548089 |
T |
|
| Q |
112 |
cactcatttagacaattctatagagagtgtgatatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagcatgtaatattatat |
211 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51548090 |
cactcatttagacaattctatagagagtgtgacatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagcatgtaacattatat |
51548189 |
T |
|
| Q |
212 |
caagaatgccattacctaaccaatacactgtcatcactgcacagtcaagagattcacctgatgaagacactggcatctcaatccaaaactgttcaatttt |
311 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51548190 |
caagaatgccattacctaaccaatacactgtaatcactgcacagtcaagagattcacctgatgaagacactggcatctcaatccaaaactgttcaatttt |
51548289 |
T |
|
| Q |
312 |
agctactactgatttgtataacaactctaacaacatcaagagttaccttggaaggccttggagggtttattctaggactgttttcattgagtcttacatt |
411 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51548290 |
agctactactgatttgtataacaactataacaacatcaagagttaccttggaaggccttggagggtttattctaggactgttttcattgagtcttacatt |
51548389 |
T |
|
| Q |
412 |
gatgtgttcattgatccaatgggatggacgaaatg |
446 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
51548390 |
gatgtgttcattgatccaatgggatggacgaaatg |
51548424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 17 - 446
Target Start/End: Original strand, 19476428 - 19476857
Alignment:
| Q |
17 |
cagagaagcatcaagcagttgcattaagagtgaatgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgttcactc |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
19476428 |
cagagaaacatcaagcagttgcattaagagtaaatgcagatttaacagcattttacaaatgcgcaatttatggttaccaagacacactttatgtccactc |
19476527 |
T |
|
| Q |
117 |
atttagacaattctatagagagtgtgatatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagcatgtaatattatatcaaga |
216 |
Q |
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||| ||||||||||| | || || || |||| ||||| ||||||| ||||||||| || || |||||||| ||||||| ||| | || |||||||| |
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| T |
19476528 |
attcagacaattctaccgcgaatgcgacatttacgggacaatagatttcatatttggtaacgccgcagtagtattacaagaatgcgacatcgtatcaaga |
19476627 |
T |
|
| Q |
217 |
atgccattacctaaccaatacactgtcatcactgcacagtcaagagattcacctgatgaagacactggcatctcaatccaaaactgttcaattttagcta |
316 |
Q |
| |
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|||||||||||| |||| || || || || || || ||| | ||| ||||| |||||||| || || ||||||||||| ||||| ||| | |||| |
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| T |
19476628 |
atgccattacctggtcaatttacagttataaccgcgcaatcacgggataaccctgacgaagacacgggaatttcaatccaaaattgttcgattatcgcta |
19476727 |
T |
|
| Q |
317 |
ctactgatttgtataacaactctaacaacatcaagagttaccttggaaggccttggagggtttattctaggactgttttcattgagtcttacattgatgt |
416 |
Q |
| |
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| ||| | ||| ||||||| || |||||||||||||||| ||||| |||||||||| |||||| || ||||| ||||||||||| ||||||| |
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| T |
19476728 |
cggatgagctttattcaaactctagtaaggtcaagagttaccttgggaggccgtggagggttttttctagaacggttttaattgagtcttatattgatga |
19476827 |
T |
|
| Q |
417 |
gttcattgatccaatgggatggacgaaatg |
446 |
Q |
| |
|
|| ||||||| || ||| ||||| ||||| |
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|
| T |
19476828 |
ttttattgatcaaaagggttggaccaaatg |
19476857 |
T |
|
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