View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19110_low_2 (Length: 452)
Name: NF19110_low_2
Description: NF19110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19110_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 55301665 - 55301406
Alignment:
| Q |
6 |
agaagcaaaggaatctatatacacagacataaacatgctaaaaatagtagaatacaaggacaagattgatgaatgaatatacctgcactccgtcagcgcc |
105 |
Q |
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| T |
55301665 |
agaagcaaaggaatctatatacacagacataaacatgctaaaaatagtagaatacaaggacaagattgatgaatgaatatacctgcactccgtcagcgcc |
55301566 |
T |
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| Q |
106 |
aaatacctcccgaagcatagcccgtatcatggatctctttcctacatttgggggtccttcaaatataaaatgattacagccacacccacctttaacctat |
205 |
Q |
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| T |
55301565 |
aaatacctcccgaagcatagcccgtatcatggatctctttcctacatttgggggtccttcaaatataaaatgattacagccacacccacctttaacctat |
55301466 |
T |
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| Q |
206 |
atacgcagcaattacaaaagaaattatattacctatgttgggcatgcagttgtgatcttg |
265 |
Q |
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| T |
55301465 |
atacgcagcaattacaaaagaaattatattacctatgttgggcatgcagttgtgatcttg |
55301406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 320 - 437
Target Start/End: Complemental strand, 55301351 - 55301234
Alignment:
| Q |
320 |
cgaagcatcatattcttcttaccaatgctttcagctgaagtgctttatctctgttgcagatgaagtctgccaatatcttgggctggtatttggttgccca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55301351 |
cgaagcatcatattcttcttaccaatgctttcagctgaagtgctttatctctgttgcagatgaagtctgccaatatcttgggctggtatttggttgccca |
55301252 |
T |
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| Q |
420 |
cagatactcatacatatt |
437 |
Q |
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| T |
55301251 |
cagatactcatacatatt |
55301234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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