View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19110_low_3 (Length: 351)
Name: NF19110_low_3
Description: NF19110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19110_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 88 - 336
Target Start/End: Complemental strand, 17692191 - 17691942
Alignment:
| Q |
88 |
ttccttcaacactacctcaacagatccaacatcaccacctcaacagaacttaatcatcttttcaaacaaacatgtctggttacataagggtgtggtacat |
187 |
Q |
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| T |
17692191 |
ttccttcaacactacctcaacagatacaacatcaccacctcaacagaacttaatcatcttttcaaacaaacatgtatggttacataagggtgtggtacat |
17692092 |
T |
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| Q |
188 |
ttgttcctctttgttttaaaccaccaatttgatcattctgatctttctcagtttcatatttccatacattcaattacgaaactgtcg-aaaaattgatgg |
286 |
Q |
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| T |
17692091 |
ttgttcctctttgttgtaaaccaccaatttgaccattctgatctttcccagtttcatatttccatacattcaattacgaaactttcgaaaaaattgatgg |
17691992 |
T |
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| Q |
287 |
gtttcaatgttgaaaccggtttttagtgcttttgatatggttgaaacaac |
336 |
Q |
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| T |
17691991 |
gtttcaatgttgaaaccggtttttagtgcttttgatatggttgaaacaac |
17691942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 32132966 - 32132902
Alignment:
| Q |
88 |
ttccttcaacactacctcaacagatccaacatcaccacctcaacagaacttaatcatcttttcaa |
152 |
Q |
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| T |
32132966 |
ttccttcaacatcacctcaacagatccaacaacaccacctcgacataacttaatcatcttgtcaa |
32132902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 1258248 - 1258175
Alignment:
| Q |
260 |
attacgaaactgtcgaaaaa-ttgatgggtttcaatgttgaaaccggtttttagtgcttttgatatggttgaaa |
332 |
Q |
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| T |
1258248 |
attacgaaactgtctaaaaaattgatgagtttcaatgttgaaaccggttttgagtgcttttgatattgttgaaa |
1258175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 30642180 - 30642116
Alignment:
| Q |
88 |
ttccttcaacactacctcaacagatccaacatcaccacctcaacagaacttaatcatcttttcaa |
152 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |||| |
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| T |
30642180 |
ttccttcaacaccacctcaacagatccaacaacaccacctcaacataacttaatcatcttgtcaa |
30642116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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