View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_high_1 (Length: 652)
Name: NF19111_high_1
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_1 |
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| [»] scaffold1787 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 596; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 7 - 634
Target Start/End: Original strand, 44728197 - 44728824
Alignment:
| Q |
7 |
gtgagatgaagcagaagcatgcagttgttgatgtgcataaagcaaagccactgctgttggttcaggcatcagtctgataacttttagaccggccatctca |
106 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44728197 |
gtgagaagaagcagaagcatgcagttgttgatgtgcataaagcaaagccactgctgttggttcaggcatcagtctaataacttttagaccggccatctca |
44728296 |
T |
|
| Q |
107 |
caagcgatacgtatctgggtttgctgcaatcgactgaacgaaactggaataataaacactacatttcttattggttgtttcagttcagtttcagccattt |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44728297 |
caagcgatacgtatccgggtttgctgcaatcgactgaacgaaactggaataataaacactacatttcttataggttgtttcagttcagtttcagccattt |
44728396 |
T |
|
| Q |
207 |
cttttaaattcaccagaaagtttccaaggagttctactgcagtggttgatttgcacactttgttcacaaatgcagctacaaaaggacgaatcttaatgtc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44728397 |
cttttaaattcaccagaaagtttccaaggagttctactgcagtggttgatttgcacactttgttcacaaatgcagctacaaaaggacgaatcttaatgtc |
44728496 |
T |
|
| Q |
307 |
caaagtgtgcatcagaaatgggaaattggcactttcattgaaaagtgcgctaatcaagtctttcaggttggaaattgcatcctcatgcgcttgggagagt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
44728497 |
caaagtgtgcatcagaaatgggaaattggcactttcgttgaaaagtgcgctaatcaagtctttcaggttggaaactgcatcctcatgcgcttgggagagt |
44728596 |
T |
|
| Q |
407 |
gagacgttgctactactagctccatcagtaaagacatgatcgaaagtttcgaaatatctcttaatcatctcatttatactttctttccaaatctccactc |
506 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44728597 |
gagacgttactactactagctccatcagtaaagacatgatcgaaagtttcgaaatatctcttaatcatctcatttatactttctttccaaatctccactc |
44728696 |
T |
|
| Q |
507 |
tggaaccattccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcaggaagaggcggcggcgaattttcctcctcgataga |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44728697 |
tggaaccattccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcaggaagaggcggcgacgaattttcctcctcgataga |
44728796 |
T |
|
| Q |
607 |
tgcaggttctgtcatcctgcattcaaag |
634 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
44728797 |
tgcaggttctgtcatcctgcattcaaag |
44728824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 9 - 333
Target Start/End: Original strand, 42927205 - 42927529
Alignment:
| Q |
9 |
gagatgaagcagaagcatgcagttgttgatgtgcataaagcaaagccactgctgttggttcaggcatcagtctgataacttttagaccggccatctcaca |
108 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||||| ||||||||||||| |||||| |||||||||| | | | | ||| | ||| | || | |
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| T |
42927205 |
gagaagaagcagaagtctgcagttgttgttgtgcataaaacaaagccactgctattggttgaggcatcagttcaacatcatcaagatcagcccacgcaga |
42927304 |
T |
|
| Q |
109 |
agcgatacgtatctgggtttgctgcaatcgactgaacgaaactggaataataaacactacatttcttattggttgtttcagttcagtttcagccatttct |
208 |
Q |
| |
|
|||| |||||||||| || |||||||| |||| |||||||||| | |||||||||| |||||||| ||| ||||| | ||||| || |
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| T |
42927305 |
agcgcgttctatctgggttcgccgcaatcgagtgaatgaaactggaacagtaaacactacctttcttataggtattttcacccgaatttcaaccgaaaac |
42927404 |
T |
|
| Q |
209 |
tttaaattcaccagaaagtttccaaggagttctactgcagtggttgatttgcacactttgttcacaaatgcagctacaaaaggacgaatcttaatgtcca |
308 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||| ||| | ||| |||| ||| ||| |||||| | ||||||||||| ||||||||||| |
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| T |
42927405 |
tttaatttcaccagaaattttccaaggagttctactgcagtggtggatctacacgctttattcgcaattgcagcaataaaaggacgaaccttaatgtcca |
42927504 |
T |
|
| Q |
309 |
aagtgtgcatcagaaatgggaaatt |
333 |
Q |
| |
|
||||||||||||||||||| ||||| |
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|
| T |
42927505 |
aagtgtgcatcagaaatggtaaatt |
42927529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 515 - 573
Target Start/End: Original strand, 42927576 - 42927634
Alignment:
| Q |
515 |
ttccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcagg |
573 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||| || ||||||||| |
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| T |
42927576 |
ttccacacagaaacacggcatggtgatgtgccaatgtcaattccaattgctatttcagg |
42927634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 47879940 - 47880004
Alignment:
| Q |
139 |
actgaacgaaactggaataataaacactacatttcttattggttgtttcagttcagtttcagcca |
203 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||||| || ||||||||| ||||||||||| |
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| T |
47879940 |
actgaaggaaactggaactgtaaacactacatttcttatccgtcgtttcagttgagtttcagcca |
47880004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 47842696 - 47842649
Alignment:
| Q |
31 |
ttgttgatgtgcataaagcaaagccactgctgttggttcaggcatcag |
78 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||| ||||||||| |
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| T |
47842696 |
ttgttgctgtgcatacaacaaagccactgctgttggttgaggcatcag |
47842649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 21354325 - 21354388
Alignment:
| Q |
14 |
gaagcagaagcatgcagttgttgatgtgcataaagcaaagccactgctgttggttcaggcatca |
77 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | || ||||||||||||| ||| ||| |||| |
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|
| T |
21354325 |
gaagcagaagcatgcagttgttgttgtgcatacaacagagccactgctgttagttgaggaatca |
21354388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 577
Target Start/End: Original strand, 21111362 - 21111423
Alignment:
| Q |
516 |
tccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcaggaaga |
577 |
Q |
| |
|
||||||| |||||||| |||| |||| |||||||||||||||||| || |||||||| |||| |
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|
| T |
21111362 |
tccacacggaaacacaacatgttgatgtgccaatgtcaattccaattgctatttcagcaaga |
21111423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 21282672 - 21282753
Alignment:
| Q |
159 |
taaacactacatttcttattggttgtttcagttcagtttcagccatttcttttaaattcaccagaaagtttccaaggagttc |
240 |
Q |
| |
|
|||||| ||||||| |||| |||||||| ||| | ||||||||||| || |||| | ||||||||| ||||||| |||||| |
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|
| T |
21282672 |
taaacagtacattttttataggttgttttggttgaatttcagccattactattaattccaccagaaattttccaatgagttc |
21282753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1787 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1787
Description:
Target: scaffold1787; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 335
Target Start/End: Complemental strand, 1349 - 1274
Alignment:
| Q |
260 |
cacactttgttcacaaatgcagctacaaaaggacgaatcttaatgtccaaagtgtgcatcagaaatgggaaattgg |
335 |
Q |
| |
|
|||||| || |||||||||| || | |||||| ||| |||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
1349 |
cacactctgatcacaaatgcggcaataaaagggtgaaccttaatgtccaagctgtgcatcagaaatgggaagttgg |
1274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 575
Target Start/End: Complemental strand, 39241023 - 39240938
Alignment:
| Q |
490 |
tttccaaatctccactctggaaccattccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcaggaa |
575 |
Q |
| |
|
|||| ||||||||||| |||||||||||| || | |||| |||| |||| ||||||| |||||||||| || ||||||||||| |
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|
| T |
39241023 |
tttcaaaatctccacttgggaaccattccatactgctacactgcattgtgaggtgccaatatcaattccaactgctatttcaggaa |
39240938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 39241497 - 39241416
Alignment:
| Q |
30 |
gttgttgatgtgcataaagcaaagccactgctgttggttcaggcatcagtctgataacttttagaccggccatctcacaagc |
111 |
Q |
| |
|
||||||| |||||||| | ||| ||||| |||||||||||||||||||| || | ||| | ||||| |||||| ||||||| |
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|
| T |
39241497 |
gttgttgctgtgcatataacaatgccacagctgttggttcaggcatcagcctaagaacatgaagaccagccatcgcacaagc |
39241416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 39241401 - 39241337
Alignment:
| Q |
136 |
tcgactgaacgaaactggaataataaacactacatttcttattggttgtttcagttcagtttcag |
200 |
Q |
| |
|
||||||||| |||||||||| ||| ||| ||||||||||||||| ||||||| | |||||||| |
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| T |
39241401 |
tcgactgaatgaaactggaactgtaagcacaacatttcttattggtcgtttcagatgagtttcag |
39241337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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