View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_high_10 (Length: 417)
Name: NF19111_high_10
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 37067096 - 37067289
Alignment:
| Q |
1 |
tttcattttagcccaaccatggtttcgtcgtaataggctaaaccttccaaaacccctcaagaaactcactggttttaatgcattttggtattcacatcac |
100 |
Q |
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| T |
37067096 |
tttcattttagcacaaccttggtttcgtcgtaataggctaaaccttccaaaacccctcaagaaactcactggtttcaatgcattttggtattcacatcac |
37067195 |
T |
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| Q |
101 |
ctttttgtcgttgtttacgtgcttttcatcattcatggatacttcctttaccttagcaagaaatggtataagaaaacggtacgtgttcttactc |
194 |
Q |
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| T |
37067196 |
ctttttgtcattgtttacgtgctatttatcattcatggatacttcctttaccttagcaagaaatggtataagaaaacggtacgtgctcttactc |
37067289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 268 - 414
Target Start/End: Original strand, 37067360 - 37067506
Alignment:
| Q |
268 |
acaaaattatgtgacatatatagacatggatgtatcttgcggttccaatgatactatacggatgcgaaagactacttcgtgcatttagatctggctacaa |
367 |
Q |
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| T |
37067360 |
acaaaattatgtgacatatatagacatggatgtatcttgcggttccaatgatactatacggatgcgaaagactacttcgtgcatttagatctggctacaa |
37067459 |
T |
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| Q |
368 |
atctgtgaggatactaaaggtacatttttaagaatttcatctcactc |
414 |
Q |
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| T |
37067460 |
atctgtgaggatactaaaggtacatttttaagaatttcatttcactc |
37067506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 181
Target Start/End: Complemental strand, 46561758 - 46561636
Alignment:
| Q |
59 |
aagaaactcactggttttaatgcattttggtattcacatcacctttttgtcgttgtttacgtgcttttcatcattcatggatacttcctttaccttagca |
158 |
Q |
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| T |
46561758 |
aagaagctcactggtttcaatgctttttggtattcacatcacctctttgtcattgtttatgctcttcttattgtccatggatacttcttatacctctcca |
46561659 |
T |
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| Q |
159 |
agaaatggtataagaaaacggta |
181 |
Q |
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| T |
46561658 |
agaaatggtacaagaaaacggta |
46561636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 368
Target Start/End: Complemental strand, 46561539 - 46561460
Alignment:
| Q |
289 |
agacatggatgtatcttgcggttccaatgatactatacggatgcgaaagactacttcgtgcatttagatctggctacaaa |
368 |
Q |
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|||| |||||||||||||| |||| |||||| |||||| ||| || ||||||||||||| ||||| |||||||||||| |
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| T |
46561539 |
agacttggatgtatcttgccattcctatgataatatacgcatgtgagcgactacttcgtgcttttaggtctggctacaaa |
46561460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 39983097 - 39983149
Alignment:
| Q |
50 |
aaacccctcaagaaactcactggttttaatgcattttggtattcacatcacct |
102 |
Q |
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| T |
39983097 |
aaacccttcaacaaactcacaggtttcaatgccttttggtattctcatcacct |
39983149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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