View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_high_11 (Length: 415)
Name: NF19111_high_11
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 33412494 - 33412889
Alignment:
| Q |
13 |
gagatgaagtactaacacaaacatcggacactacactaacatatcgacaccataaataattttaattgaatatagtaacatgtgtcggtgtcgggtccgt |
112 |
Q |
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| T |
33412494 |
gagatgaagtactaacacaaacattgtacactacactaacatatcgacagcataaataattttaattgaatatagtaacatgtgtcggtgtcgggtccgt |
33412593 |
T |
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| Q |
113 |
gtccaacattgacatgtgtcagacattgccttcaatctgaaatgtctgt-----------aattaagctaggaaataatcaaaagtatatacctcaatgt |
201 |
Q |
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| T |
33412594 |
gtccaacattgacatgtgtcacacattgccttcaatctgaaatgtctgtgtgttacggttaattaagctaggaaataatcaaaagtatatacctcaatgt |
33412693 |
T |
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| Q |
202 |
tggagtggaatcaattctgtaagtgttactccctttcttagcatactcttccatatcaagttcatatagttttttagtatcatcaggaacaggtactttc |
301 |
Q |
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| T |
33412694 |
tggagtggaatcaattctgtaagtgttactccctttcttagcatactcttccatatcaagttcatatagttttttagtatcatcaggaacaggtactttc |
33412793 |
T |
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| Q |
302 |
cattttctcaaagaagcaactatgaccctggccattctagtgaaagtactccctgcaggcaatttgtgtctataaaagggtattcctcccaagaat |
397 |
Q |
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| T |
33412794 |
cattttctcaaagaagcaactatgaccctagccattctagtgaaagtactccctgcaggcaatttgtgtctataaaagggtgttcctcccaagaat |
33412889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 375
Target Start/End: Complemental strand, 15729044 - 15728902
Alignment:
| Q |
233 |
cctttcttagcatactcttccatatcaagttcatatagttttttagtatcatcaggaacaggtactttccattttctcaaagaagcaactatgaccctgg |
332 |
Q |
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| T |
15729044 |
cctttctttgcatactcttccaaatcaagttcatatagttctttagggtcactaggaataggcacattccatttcttcatagcagccactattaccttag |
15728945 |
T |
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| Q |
333 |
ccattctagtgaaagtactccctgcaggcaatttgtgtctata |
375 |
Q |
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| T |
15728944 |
ccattttagtaaagggacttcctgtaggtaatttatgtctata |
15728902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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