View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19111_high_12 (Length: 414)
Name: NF19111_high_12
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 38072197 - 38072583
Alignment:
| Q |
18 |
catttgatcaaaatcacaaacaaaaaatgatgcctctgcgcttatatttgacaattgtactaatagcaattgcattttcatttacatcttttgcaattga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38072197 |
catttgatcaaaatcacaaacaaaaaatgatgcctctacgcttatatttgacaattgtactaatagcaattgcattttcatttacatcttttgcaattga |
38072296 |
T |
|
| Q |
118 |
tacaagtcctcatgaagataatttccttcaatgtctctatagttattcacataacataacttcaatctctaaagttgtgtacacaaaaaccaattcctct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38072297 |
tacaagtcctcatgaagataatttccttcaatgtctctatagttattcacataacataacttcaatctctaaagttgtgtacacaaaaaccaattcctct |
38072396 |
T |
|
| Q |
218 |
tactcatcaatactcaaattttcaattcaaaacctcagatttgcaaccaatgaaacaccaaaaccccttgtcattatcacacctacacaaatttcccata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38072397 |
tactcatcaatactcaaattttcaattcaaaacctcagatttgcaaccaatgaaacaccaaaaccccttgtcattatcacacctacacaaatttcccata |
38072496 |
T |
|
| Q |
318 |
ttcaaacagctataatctgttcccaacaccatggcatgcaaattcgaattcgtagtggtggccacgacttcgagggtctctcctttg |
404 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38072497 |
ttcaaacagccataatctgttcccaacaccatggcatgcaaattcgaattcgtagtggtggccacgacttcgagggtctctcctttg |
38072583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 36 - 395
Target Start/End: Complemental strand, 38062567 - 38062208
Alignment:
| Q |
36 |
aacaaaaaatgatgcctctgcgcttatatttgacaattgtactaatagcaattgcattttcatttacatcttttgcaattgatacaagtcctcatgaaga |
135 |
Q |
| |
|
||||||||||||| ||||| | | |||||||| ||||||||||| || || |||||||| |||| || |||||||||||| | | |||||||| |
|
|
| T |
38062567 |
aacaaaaaatgattcctctaagatcatatttgattattgtactaattgctgttttcttttcattcacatattctgcaattgatactactaaacatgaaga |
38062468 |
T |
|
| Q |
136 |
taatttccttcaatgtctctatagttattcacataacataacttcaatctctaaagttgtgtacacaaaaaccaattcctcttactcatcaatactcaaa |
235 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
38062467 |
aaatttcctacaatgtctctatagttattcacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaa |
38062368 |
T |
|
| Q |
236 |
ttttcaattcaaaacctcagatttgcaaccaatgaaacaccaaaaccccttgtcattatcacacctacacaaatttcccatattcaaacagctataatct |
335 |
Q |
| |
|
||| | | |||||| |||||||||||| |||| |||||| ||||| ||||||||||||||||||| ||| |||||||| ||||||||| | ||||||| |
|
|
| T |
38062367 |
tttaccactcaaaatctcagatttgcatccaaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatct |
38062268 |
T |
|
| Q |
336 |
gttcccaacaccatggcatgcaaattcgaattcgtagtggtggccacgacttcgagggtc |
395 |
Q |
| |
|
|||||||| |||| | |||| |||||||| || || || ||||||||||||||||||| |
|
|
| T |
38062267 |
gttcccaaagacatgacctgcagattcgaatccgaagcggcggccacgacttcgagggtc |
38062208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 91 - 339
Target Start/End: Original strand, 38057942 - 38058190
Alignment:
| Q |
91 |
attttcatttacatcttttgcaattgatacaagtcctcatgaagataatttccttcaatgtctctatagttattcacataacataacttcaatctctaaa |
190 |
Q |
| |
|
|||||||| |||||||| | |||||||||| ||| | |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
38057942 |
attttcatatacatcttcttcaattgatactagtacacatgaagaaaatttccttgaatgtctctatagttattcacataactcaacttcaatctctgaa |
38058041 |
T |
|
| Q |
191 |
gttgtgtacacaaaaaccaattcctcttactcatcaatactcaaattttcaattcaaaacctcagatttgcaaccaatgaaacaccaaaaccccttgtca |
290 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||| |||||||||||| |||| |||||| ||||| ||| ||| |
|
|
| T |
38058042 |
gttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgcatccaacacaacacctaaacctcttttca |
38058141 |
T |
|
| Q |
291 |
ttatcacacctacacaaatttcccatattcaaacagctataatctgttc |
339 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||| | ||||||||||| |
|
|
| T |
38058142 |
ttatcacacctaaacagatttcccaaattcaaacaaccataatctgttc |
38058190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 41 - 393
Target Start/End: Original strand, 38081305 - 38081657
Alignment:
| Q |
41 |
aaaatgatgcctctgcgcttatatttgacaattgtactaatagcaattgcattttcatttacatcttttgcaattgatacaagtcctcatgaagataatt |
140 |
Q |
| |
|
|||||||||||||| ||| ||||||| | ||| ||| || || ||| |||||||| | |||||| |||||||||||| | | || |||||||||| | |
|
|
| T |
38081305 |
aaaatgatgcctctaagctcatatttgtctgttgcacttattgctattttattttcatatgcatcttctgcaattgatactaatacttatgaagataact |
38081404 |
T |
|
| Q |
141 |
tccttcaatgtctctatagttattcacataacataacttcaatctctaaagttgtgtacacaaaaaccaattcctcttactcatcaatactcaaattttc |
240 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||| | |
|
|
| T |
38081405 |
tccttcaatgtctttctagttattcacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaatttac |
38081504 |
T |
|
| Q |
241 |
aattcaaaacctcagatttgcaaccaatgaaacaccaaaaccccttgtcattatcacacctacacaaatttcccatattcaaacagctataatctgttcc |
340 |
Q |
| |
|
|| |||||| || ||||||||| || | ||||||||||||| |||||||| ||||||||| | || |||||||||||||||||| ||||| |||||| |
|
|
| T |
38081505 |
aactcaaaatctaagatttgcatcctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttcc |
38081604 |
T |
|
| Q |
341 |
caacaccatggcatgcaaattcgaattcgtagtggtggccacgacttcgaggg |
393 |
Q |
| |
|
||| | |||||| | || ||||||| |||||||| ||||| ||||| ||||| |
|
|
| T |
38081605 |
caaaatcatggcctccagattcgaacccgtagtgggggccatgactttgaggg |
38081657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 39 - 396
Target Start/End: Original strand, 38085719 - 38086085
Alignment:
| Q |
39 |
aaaaaatgatgcctctgcgcttatatttgacaattgtactaatagcaattgcattttcatttacatcttttgcaattgatacaagtcctc------atga |
132 |
Q |
| |
|
|||||||||||| ||| ||| ||| ||| | ||||||||||| || ||| ||||||||||||||||| ||||||| ||| | | || |||| |
|
|
| T |
38085719 |
aaaaaatgatgcatctaggctcatacttgtctattgtactaattgctattttattttcatttacatcttcagcaattggtactactactactactaatga |
38085818 |
T |
|
| Q |
133 |
agataat---ttccttcaatgtctctatagttattcacataacataacttcaatctctaaagttgtgtacacaaaaaccaattcctcttactcatcaata |
229 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| ||||||| || ||| |||||||| |
|
|
| T |
38085819 |
agataatagcttccttcaatgtctctatagctattcacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaata |
38085918 |
T |
|
| Q |
230 |
ctcaaattttcaattcaaaacctcagatttgcaaccaatgaaacaccaaaaccccttgtcattatcacacctacacaaatttcccatattcaaacagcta |
329 |
Q |
| |
|
||| ||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||| ||| |||||||| | ||||||||||||||||| || | |
|
|
| T |
38085919 |
ctccaattttcaactcaaaatctcagatttgcaaccaacaaaacaccaaaaccacttgtaattgtcacacctctagaaatttcccatattcaagcaaccg |
38086018 |
T |
|
| Q |
330 |
taatctgttcccaacaccatggcatgcaaattcgaattcgtagtggtggccacgacttcgagggtct |
396 |
Q |
| |
|
|||| ||||||||| |||| || |||| ||||||||||| || || || |||||||| |||||||| |
|
|
| T |
38086019 |
taatttgttcccaataccacagcctgcagattcgaattcgcagcggcggtcacgactttgagggtct |
38086085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 37953843 - 37953914
Alignment:
| Q |
330 |
taatctgttcccaacaccatggcatgcaaattcgaattcgtagtggtggccacgacttcgagggtctctcct |
401 |
Q |
| |
|
|||| ||||||| || ||||| |||||| |||||||| || |||||||||||||||| ||| ||||| |||| |
|
|
| T |
37953843 |
taatttgttcccgacgccatgacatgcagattcgaatccgaagtggtggccacgactacgaaggtctgtcct |
37953914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University