View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_high_20 (Length: 261)
Name: NF19111_high_20
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 21651977 - 21651749
Alignment:
| Q |
15 |
aatatcaggatgcaaaaaccttttagcataccacctgcataaaacagtataagaagtaaaagcttagatacgacgaactgcttcaagaattctcaagttt |
114 |
Q |
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| T |
21651977 |
aatatcaggatgcaaaaaccttttagcataccacctgcataaaacagtataagaagtaaaagcttagatatgacaaactgcttcaagaattctcaagttt |
21651878 |
T |
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| Q |
115 |
tatttaagagcgaaaaacctcagcctgtacattgtcaaccaaaaatcgaggggaaagggatgnnnnnnncataccatttggtttgtttcctagcactaat |
214 |
Q |
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| T |
21651877 |
tatttaagagcgaaaaacctcagcctgtacattgtcaaccaaaaatcgaggggaaagggatgaaaaaaacataccatttggtttgtttcctagcactaat |
21651778 |
T |
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| Q |
215 |
atggattactttctttgaccattcgtatc |
243 |
Q |
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| T |
21651777 |
atggattactttctttgaccattcatatc |
21651749 |
T |
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Back To:
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 40420101 - 40420151
Alignment:
| Q |
185 |
ataccatttggtttgtttcctagcactaatatggattactttctttgacca |
235 |
Q |
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| T |
40420101 |
ataccattttgtttgtttccttgcactaacatggattgcattctttgacca |
40420151 |
T |
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