View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_high_22 (Length: 246)
Name: NF19111_high_22
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 23570290 - 23570525
Alignment:
| Q |
1 |
tttctatcacagcattcgccttttgttttaaagattctaattgtggacaagatctatgtacatctcctaatgaagttccagaatgtaggttgctaaagtg |
100 |
Q |
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| T |
23570290 |
tttctatcacagcattcgctttttgtattaaagattctaattgtggacaagatctatgtacatctcctaatgaagttccagaatgtaggttgctaaagtg |
23570389 |
T |
|
| Q |
101 |
tcaatgtattaaatcataggtaagttgaaaaatagttctatattatgaataatataaagttttatttgctcatcttaatgttaccagtcttatgtatttt |
200 |
Q |
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| T |
23570390 |
tcaatgtattaaatcataggtaagttgaaaaatagttctatattatgaataatatatagttttatttgctcatcttaatgttaccagttttatgtatttt |
23570489 |
T |
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| Q |
201 |
ttaatactttgatgaatatttcacgtactttgtcat |
236 |
Q |
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|||||||||||||||||||||||| |||||| |||| |
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| T |
23570490 |
ttaatactttgatgaatatttcacatactttttcat |
23570525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 24179135 - 24179059
Alignment:
| Q |
98 |
gtgtcaatgtattaaatcataggtaagttgaaaaatagttctatattatgaat-aatataaagttttatttgctcat |
173 |
Q |
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|||||| || ||||||||||||||||||||||||||| || ||| |||||||| ||| || |||||||||| ||||| |
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| T |
24179135 |
gtgtcattgcattaaatcataggtaagttgaaaaataattatatgttatgaataaatctatagttttattttctcat |
24179059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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