View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_high_23 (Length: 238)
Name: NF19111_high_23
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41230658 - 41230444
Alignment:
| Q |
1 |
caatttgcagaatagctctttctcatgagtcgaaaaaa-tcttattgtagtgaaagacagaaatttacctccagttcgactgtcctgcatgatccaatgt |
99 |
Q |
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| T |
41230658 |
caatttggagaatagctctttctcatgagtcgaaaaaaatcttattgtagtgaaa--------tttacctccagttcgactgtcctgcatgatccaatgt |
41230567 |
T |
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| Q |
100 |
ctgccctaaacgaatgccaacttcttgtgtctttatttcacttggatatgcttcagcacattgcggctgagaaaactcctgcattttattaaccaggcca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |
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| T |
41230566 |
ctgccctaaacgaatgccaacttcttgtgtctttatttcagttggatatgcttcagcacattgtggctgagaaaactcctgcattttatcaaccaggcga |
41230467 |
T |
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| Q |
200 |
ctctcgtcttccatgtttgggtt |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
41230466 |
ctctcgtcttccatgtttgggtt |
41230444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 42414057 - 42413888
Alignment:
| Q |
49 |
gtgaaagacagaaatttacctccagttcgactgtcctgcatgatccaatgtctgccctaaacgaatgccaacttcttgtgtctttatttcacttggatat |
148 |
Q |
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| T |
42414057 |
gtgaaagaaagaaatttacctccggcgtgactgtcctgcgcgatcaca-gcctggcctaaatgaatgtcaagttctcgtgtctttatttcacttggatat |
42413959 |
T |
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| Q |
149 |
gcttcagcacattgcggctgagaaaactcctgcattttattaaccaggccactctcgtcttccatgtttgg |
219 |
Q |
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| T |
42413958 |
gcttccgcacatttcagctgagaaaattcatgcatgttatcaaccaggccactctcagcttccatgtttgg |
42413888 |
T |
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