View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_high_27 (Length: 211)
Name: NF19111_high_27
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 26225615 - 26225787
Alignment:
| Q |
49 |
aactcaggatatataatcaaaagcaattgttaccttaacatgaactgacgtcattcctgctactattaaca-----ataaacaataa-----acatcttt |
138 |
Q |
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| T |
26225615 |
aactcaggatatataatcaaaagcaattgttaccttaacatgaactgacgtcattcctgctactattatcactttcatataaaatcatagatacatcctt |
26225714 |
T |
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| Q |
139 |
cataatcatcataatcaaaaccataatcgtattcgctgttgcaataatcatactcataaccataatcataatc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26225715 |
cataatcatcataatcaaaaccataatcgtattcgctgttgcaataatcatactcataaccataatcataatc |
26225787 |
T |
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