View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_high_28 (Length: 209)
Name: NF19111_high_28
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 16606718 - 16606560
Alignment:
| Q |
14 |
atttcttcttcaattttcagaaatttcttcatctttgtttgttgtacaacccacttccttaaatgtcnnnnnnnnnngttgaacacagggaatccatttc |
113 |
Q |
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| T |
16606718 |
atttcttcttcaattttcagaaatttcttcatctttgtttgctgtacaacccacttccttaaatgtcttttttttttgttgaacacagggaatccatttc |
16606619 |
T |
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| Q |
114 |
ccacgccaccacacattaagaagcaactccaagtaccttcaaaattctaatcctcaaat |
172 |
Q |
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| T |
16606618 |
ccacgccaccacacattaagaagcaactccaagtaccttcaaaattctaatcctcaaat |
16606560 |
T |
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Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 44522417 - 44522599
Alignment:
| Q |
14 |
atttcttcttcaattttcagaaatttcttcatctttgtttgttgtacaacccacttccttaaatgtcnnnnnnnnnngttgaacacagggaatccatttc |
113 |
Q |
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| T |
44522417 |
atttcttcttcaattttcagaaatttcttcatctttgtttgctgtacaacccacttccttaaatgtcttttttttttgttgaacacatggaatccatttc |
44522516 |
T |
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| Q |
114 |
ccacgccaccacacattaagaagcaactccaagtaccttcaaaattctaatcctcaaatctc-aaaatctcaaatttcctttg |
195 |
Q |
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| T |
44522517 |
ccacgccaccacacattaaaaagcaacttcaagtaccttcaaaattctaatcctcaaatgtcaaaaatctcaaatttcctttg |
44522599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 3556132 - 3555953
Alignment:
| Q |
17 |
tcttcttcaattttcagaaatttcttcatctttgtttgttgtacaacccacttccttaaatgtcnnnnnnnnnn-gttgaacacagggaatccatttccc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| || |||||||||| ||||||||||||| |
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| T |
3556132 |
tcttcttcaattttcagaaatttcttcatctttgtttgctatacaacccacttccttaaacatctttttttttttgttgaacacaaggaatccatttcct |
3556033 |
T |
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| Q |
116 |
acgccaccacacattaagaagcaactccaagtaccttcaaaattctaatcctcaaatctcaaaatctcaaatttcctttg |
195 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
3556032 |
acgccaccacacattaagaaacaactccaagtaccttcaaaattctaatcctcaaatgtcaaaatctcaaattttctttg |
3555953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 36858771 - 36858837
Alignment:
| Q |
122 |
ccacacattaagaagcaactccaagtaccttcaaaattctaatcctcaaatctcaaaatctcaaatt |
188 |
Q |
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| T |
36858771 |
ccacacattaagaagcaactcgaagtcccttcaaaattctaatcctcaaatgtcaaaatctcaaatt |
36858837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 36859345 - 36859415
Alignment:
| Q |
91 |
gttgaacacagggaatccatttcccacgccaccacacattaagaagcaactccaagtaccttcaaaattctaat |
164 |
Q |
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||||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
36859345 |
gttgaccacagtgaatccatttcccac---accacacatgaagaagcaactccaagtcccttcaaaattctaat |
36859415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 33155157 - 33155236
Alignment:
| Q |
116 |
acgccaccacacattaagaagcaactccaagtaccttcaaaattctaatcctcaaatctcaaaatctcaaatttcctttg |
195 |
Q |
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| T |
33155157 |
acgccaccacacattaagaagcaactccaagtaccttcaaaattctaatcctcaaatgtcaaaatctcaaatttcctttg |
33155236 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 6314666 - 6314632
Alignment:
| Q |
154 |
aaaattctaatcctcaaatctcaaaatctcaaatt |
188 |
Q |
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||||||||||||||||||| ||||||||||||||| |
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| T |
6314666 |
aaaattctaatcctcaaatgtcaaaatctcaaatt |
6314632 |
T |
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