View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_high_3 (Length: 533)
Name: NF19111_high_3
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 12 - 517
Target Start/End: Complemental strand, 5037312 - 5036800
Alignment:
| Q |
12 |
aaaggttaatatgttaaagaaaattttgaacaaaatacattaatatttttgacaaacttttacttatatttgagatcacannnnnnnnatcaatatattt |
111 |
Q |
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| T |
5037312 |
aaaggttaatatattaaagaaaattttgaacaaaatacattaatatttttgacaaacttttacttatatttgagatcacattttttttatcaatatattt |
5037213 |
T |
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| Q |
112 |
gagatcacattatatacacaacttttcttaatagtataactttaaacgtagatgtgcttgtt------atctaagtagggtaggacttcgcaatggcttt |
205 |
Q |
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| T |
5037212 |
gagatctcattatatacacaacttttcttaata-ta-aactttaaacgtagatgtgcttgttggtgttatctaaatagggaaggacttcgcaacggcttt |
5037115 |
T |
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| Q |
206 |
tctaaacaaaggttatcataaccaatcacttgcatttccacgtgttaggaagtaacttttctgttcaatagaaattggcccgtgactttgtaaaacgtta |
305 |
Q |
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| T |
5037114 |
tctaaacaaaggttatcataaccaatcacttgcatttccacgtgttaggaagtaacttttctgttcaatagaaattggctcgtgactttgtgaaacgtta |
5037015 |
T |
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| Q |
306 |
atatccaatttcagattgtagctttgatttttcatttgatggacaaaattatggatgatgacaattgacaaagaaacaaacatagccgtgtttgacactg |
405 |
Q |
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| T |
5037014 |
atatccaatttcagattgtagctttgatttttcatttgatggacaaaattatggatgatgacaactgacaaagaaacaaacatagccgtgtttgacactg |
5036915 |
T |
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| Q |
406 |
ctctaataannnnnnnatcaccaacagcaacagagttagtgaggaggccatagaggggaccct---ttatatagacaaaagatttagggttgcttgagat |
502 |
Q |
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| T |
5036914 |
ctctaataatttttttatcaccaacagtaacagagttagtgaggaggccatagagtggaccctttattatatagacaaaagatttagggttgcttgagat |
5036815 |
T |
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| Q |
503 |
taatagtatgtttac |
517 |
Q |
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| T |
5036814 |
taatagtatgtttac |
5036800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 503
Target Start/End: Complemental strand, 5034761 - 5034705
Alignment:
| Q |
448 |
ggaggccatagaggggacccttt-atatagacaaaagatttagggttgcttgagatt |
503 |
Q |
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| T |
5034761 |
ggaggacatagagtggacccttttatatagactaaagatttagggcagcttgagatt |
5034705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 2884314 - 2884263
Alignment:
| Q |
32 |
aaattttgaacaaaatacattaatattt-ttgacaaacttttacttatattt |
82 |
Q |
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| T |
2884314 |
aaattttgaaccaaatacattaatttttgttgacaaatttttacttatattt |
2884263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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