View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_high_6 (Length: 488)
Name: NF19111_high_6
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Original strand, 9455102 - 9455539
Alignment:
| Q |
18 |
gtatggaacctgatcagttgtccaatctgtatatttttcatctagctcccatttttctagttagagctgtttagaagctaatcaattttaagaatcttga |
117 |
Q |
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| T |
9455102 |
gtatggaacctaatcagttgtccaatctgtatatttttcatctagctcccatttttctagttagagctgtttagaagttaatctattttaagaatcttga |
9455201 |
T |
|
| Q |
118 |
tatgttgcttttaatgaacatgaaaagtaaaggtagatataacgccccatttttcctatcttacgtgctaacgtttgaacttggacttgtgttatatttg |
217 |
Q |
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| T |
9455202 |
tatgttgcttttaatgaacatgaaaagtaaaggtagatataacgccccatttttcctatcttacgtgctaacgtttgaacttggacttgtgttatatttg |
9455301 |
T |
|
| Q |
218 |
tgtttcattttagtgtatttctgcattgggtaagtctagtttatttttgcgtagacatgaataagtctagacnnnnnnntgtctttttccagccgcacga |
317 |
Q |
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| T |
9455302 |
tgtttcattttagggtatttctgcattgggtaagtctagtttatttttgcgtagacatgaataagtctagacaaaaaaatgtctttttccagccgcacga |
9455401 |
T |
|
| Q |
318 |
gtaaattcagacgagtcttgttcaataaattcctcaaatttctcaactgatggaagtagtttttatattccatctcctagactagctcaagagcccacaa |
417 |
Q |
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| T |
9455402 |
gtaaattcagacgagtcttgttcaataaattcctcgaatttctcaactgatggaagtggtttttatattccatctcctagactagctcaagagcccacaa |
9455501 |
T |
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| Q |
418 |
taggccaaatgttaccccttccaacgtgggaattttgc |
455 |
Q |
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| T |
9455502 |
taggccaaatgttaccccttccaacgtgggaattttgc |
9455539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 134 - 368
Target Start/End: Original strand, 9434293 - 9434535
Alignment:
| Q |
134 |
aacatgaaaagtaaaggtaga---tataacgccccatttttcctatcttacgtgctaacgtttgaacttggacttgtgttatatttgtgtttcattttag |
230 |
Q |
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|||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||| | |||||| ||||| |||||||||||||||||||||||||| |
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| T |
9434293 |
aacatggaaagtaatggtagagcctataacaccccatttttcctatcttacgtgctaatgattgaacctggacatgtgttatatttgtgtttcattttag |
9434392 |
T |
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| Q |
231 |
tgtatttctgcattgggtaagtctagtttatttttgcgtagacatgaataagtctagac-nnnnnnntgtcttttt----ccagccgcacgagtaaattc |
325 |
Q |
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| T |
9434393 |
ggtatttctgtattgggtaagtctagtttatttttgcgtcgacgtgtataagtctagacaaaaaaaatgttttttttttaccagctgcacgagtaaattc |
9434492 |
T |
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| Q |
326 |
agacgagtcttgttcaataaattcctcaaatttctcaactgat |
368 |
Q |
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| T |
9434493 |
agacgagtcttgctcaataaattcctcaaattgctcaactgat |
9434535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 9434111 - 9434215
Alignment:
| Q |
30 |
atcagttgtccaatctgtatatttttcatctagctcccatttttctagttagagctgtttagaagctaatcaattttaagaatcttgatatgttgctttt |
129 |
Q |
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|||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| || || || ||||| |||||||||||||||||||||||||||| |
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| T |
9434111 |
atcatttgtccaatctgtatgtttttcatctagctccc-tttttctagttagagctcttaaggagttaatctattttaagaatcttgatatgttgctttt |
9434209 |
T |
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| Q |
130 |
aatgaa |
135 |
Q |
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| |||| |
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| T |
9434210 |
attgaa |
9434215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 376 - 455
Target Start/End: Original strand, 9434672 - 9434747
Alignment:
| Q |
376 |
gtttttatattccatctcctagactagctcaagagcccacaataggccaaatgttaccccttccaacgtgggaattttgc |
455 |
Q |
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| T |
9434672 |
gtttttaaattccatctccta----agctcaagagcccacaataggccaaatgttaccccttccaacgtgggaattttgc |
9434747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 9486884 - 9486983
Alignment:
| Q |
35 |
ttgtccaatctgtatatttttcatctagctcccatttttctagttagagctgtttagaagctaatcaattttaagaatcttgatatgttgcttttaatga |
134 |
Q |
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| T |
9486884 |
ttgtccaatctgaatattcttcatctagctcccatttttccaggtagagctcttaaggagttaa-ctattttaagaatcttgatatgttgcgtttaatga |
9486982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 9454817 - 9454872
Alignment:
| Q |
162 |
ccccatttttcctatcttacgtgctaacgtttgaacttggacttgtgttatatttg |
217 |
Q |
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| T |
9454817 |
ccccatttttcccttcatatgttctaacgtttgaactaggacttgtgttatatttg |
9454872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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