View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19111_high_7 (Length: 473)
Name: NF19111_high_7
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 25 - 465
Target Start/End: Complemental strand, 52329918 - 52329481
Alignment:
| Q |
25 |
ggcttgttgtttataacagcatactcatgttcaggtattgtctcatctttggagaatctaagctgtgattaatttgcagaaaatgaaatatcaaaatgtg |
124 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52329918 |
ggcttgttgtttataacaacatactcatgttccggtattgtttcatctttggagaatctaagctgtgattaatttgcagaaaatgaaatatcaaaatgtg |
52329819 |
T |
|
| Q |
125 |
ttgattaaaatggatattcaaatcaatgcagtttgtaatattaatgatatatactaacccctaatgctccatttggtgattgtctgaagaaaacaccagc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52329818 |
ttgattaaaatggatattcaaatcaatgcagtttgttatattaatgata----ctaacccctaatgctccatttggtgattgtctgaagaaaacaccagc |
52329723 |
T |
|
| Q |
225 |
ccctggtggaaaaaattgaaccttgaaggcttctctaagttcttgaatggctttttcttctgcatcgccatatgttccttcaaatttcatacgggcaatg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52329722 |
ccctggtggaaaaaattgaaccttgaaggcttctctaagttcttgaatggctttttcttctgcatcgccatatgttccttcaaatttcatatgggcaatg |
52329623 |
T |
|
| Q |
325 |
caattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacatcgaataaacttctcaaagggacctaaacacatccataaa- |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52329622 |
caattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacatcgaataaacttctcaaagggacctaaacacacccataaat |
52329523 |
T |
|
| Q |
424 |
aaatgagtacgatggattcaagaatgacatagcagaataatc |
465 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52329522 |
aaatgagtgcgatggattcaagaatgacatagcagaataatc |
52329481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 423
Target Start/End: Complemental strand, 52325494 - 52325094
Alignment:
| Q |
21 |
aagcggcttgttgtttataacagcatactcatgttcaggtattgtctcatctttggagaatctaagctgtg--attaatttgcagaaaatgaaatatcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||| |
|
|
| T |
52325494 |
aagcggcttgttgtttataacagcatactcatgttcaggtattgtctcatctttggagaatctaagctgtgtgattaatttgtagaaaaagaaatatcaa |
52325395 |
T |
|
| Q |
119 |
aatgtgttgattaaaatggatattcaaatcaatgcagtttgtaatattaatgatatatactaacccctaatgctccatttggtgattgtctgaagaaaac |
218 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
52325394 |
aatgtgttgattaaaatggatatttagatacatgcaataggtaatattaatgaca----ctaacccctaatgctccatttggtgattgtctgtagaaagc |
52325299 |
T |
|
| Q |
219 |
accagcccctggtggaaaaaattgaaccttgaaggcttctctaagttcttgaatggctttttcttctgcatcgccatatgttccttcaaatttcatacgg |
318 |
Q |
| |
|
| ||| |||||||||||||||||| |||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
52325298 |
agcagttcctggtggaaaaaattgatccttaaaagcttctctaaattcttgaatggctttttcttctgcatcgccatatgttccttcagatttcatatgg |
52325199 |
T |
|
| Q |
319 |
gcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacatcgaataaacttctcaaagggacctaaacacatcc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| || |
|
|
| T |
52325198 |
gcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaataaatttctcaaagggacctaaaaacaccc |
52325099 |
T |
|
| Q |
419 |
ataaa |
423 |
Q |
| |
|
||||| |
|
|
| T |
52325098 |
ataaa |
52325094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 294 - 388
Target Start/End: Complemental strand, 52332889 - 52332795
Alignment:
| Q |
294 |
atatgttccttcaaatttcatacgggcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacatcgaa |
388 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
52332889 |
atatgttccttcagatttcatatgggcaatgcaattttctgacacctttctcacatattcactaccgtctagtgttctcacctttgtacttcgaa |
52332795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 52322199 - 52322111
Alignment:
| Q |
174 |
tatactaacccctaatgctccatttggtgattgtctgaagaaaacaccagcccctggtggaaaaaattgaaccttgaaggcttctctaa |
262 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| || ||||||||| ||| || | ||||||| |||| |||||||||||||||||| |
|
|
| T |
52322199 |
tatactaacccctaatgttccagttggtgattgtttgtagaaaacactagcgccagttggaaaattttgatccttgaaggcttctctaa |
52322111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 52322108 - 52322048
Alignment:
| Q |
295 |
tatgttccttcaaatttcatacgggcaatgcaattttctgacacctttctcacatattcac |
355 |
Q |
| |
|
|||||||| ||| |||||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
52322108 |
tatgttccatcagatttcatataagcaatacaattttctgacaccttcctcacatattcac |
52322048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 465
Target Start/End: Complemental strand, 51622060 - 51622027
Alignment:
| Q |
432 |
acgatggattcaagaatgacatagcagaataatc |
465 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
51622060 |
acgatggattcaagaatgacatggcagaataatc |
51622027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 264 - 371
Target Start/End: Complemental strand, 9179380 - 9179273
Alignment:
| Q |
264 |
ttcttgaatggctttttcttctgcatcgccatatgttccttcaaatttcatacgggcaatgcaattttctgacacctttctcacatattcactaccttct |
363 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9179380 |
ttcttgaatggctttttcttctgcatcaccatatgttccttcagatttcatatgggcaatgcaattttctgatacctttctcacatattcactaccttct |
9179281 |
T |
|
| Q |
364 |
agtgttct |
371 |
Q |
| |
|
|||||||| |
|
|
| T |
9179280 |
agtgttct |
9179273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 39 - 210
Target Start/End: Complemental strand, 9179540 - 9179385
Alignment:
| Q |
39 |
aacagcatactcatgttcaggtattgtctcatctttggagaatctaagctgtg--attaatttgcagaaaatgaaatatcaaaatgtgttgattaaaatg |
136 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||||| |
|
|
| T |
9179540 |
aacagcatactcatgttcatgtattgtctcatctttggagaatctaagctgtgtgattaatttgtagaaaaagaaatat--------------taaaatg |
9179455 |
T |
|
| Q |
137 |
gatattcaaatcaatgcagtttgtaatattaatgatatatactaacccctaatgctccatttggtgattgtctg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9179454 |
gatattcaaatcaatgcagtttgtaatattaatg----atactaacccctaatgttccatttggtgattgtctg |
9179385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University