View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_high_8 (Length: 439)
Name: NF19111_high_8
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 43713287 - 43712879
Alignment:
| Q |
18 |
attacatataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcaaaaatgagcatagcgaat |
117 |
Q |
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| T |
43713287 |
attacatataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcgaaaatgagcatagcgaat |
43713188 |
T |
|
| Q |
118 |
ggaggaaaatcgagagaggggagggatgaggtgtggttaggagttaaagttgaaatactgagtggctatgaggcaaaaagcattaacaagcaatattttt |
217 |
Q |
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| T |
43713187 |
ggaggaaaatcgagagaggggagggatgaggtgtggttaggagttaaagttgaaatactgagtggctatgaagcaaaaagcattaacaagcaatattttt |
43713088 |
T |
|
| Q |
218 |
aaatattttccaaatgacaaagttccatactcaagcaaatgtaaactgtgtctgtgtccaagtacttcccaggaaggaaacagtaagcaatccatgaaca |
317 |
Q |
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| T |
43713087 |
aaatattttccaaatgacaaagttccatactcaagcaaatgtaaactgtgtctgtgtccaagtacttgccaggaaggaaacagtaagcaatccatgaaca |
43712988 |
T |
|
| Q |
318 |
agagaagctatatgtaaggattagtcaaatccttaaccaagggatttagcttcccctcttatttatttattaggattatgattccgttagttacgaaatt |
417 |
Q |
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| T |
43712987 |
agagaagctatatgtaaggattagtcaaatccttaaccaagggatttagcttcccctcttatttatttattaggattatgattccgttagttacgaaatt |
43712888 |
T |
|
| Q |
418 |
tgtgtccct |
426 |
Q |
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| T |
43712887 |
tgtgtccct |
43712879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 206 - 426
Target Start/End: Complemental strand, 42572412 - 42572183
Alignment:
| Q |
206 |
agcaatatttttaaatattttccaaatgacaaagt-tccatactcaagcaaatgtaaactgtgtctgtgtccaagtacttcccaggaaggaaacagtaag |
304 |
Q |
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| T |
42572412 |
agcaatatttttaaataatttccaaatgacaaaaaatccatactcaagcaac-gtaaactgtgtctgtgtccaagtacttgccaggaaggaaacagtaag |
42572314 |
T |
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| Q |
305 |
caatccatgaacaagagaagctat-----atgtaaggattagtcaaatccttaaccaagggatttagcttcccctc----ttatttatttattaggatta |
395 |
Q |
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| T |
42572313 |
caatccatgaacaaaagaagctataattaatgtaaggattagtcaaatacttaatcaagggattttgcttctccccttatttatttatttattaggatta |
42572214 |
T |
|
| Q |
396 |
tgattccgttagttacgaaatttgtgtccct |
426 |
Q |
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| T |
42572213 |
tgattccattagttaagaaatttgtgtccct |
42572183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 187 - 371
Target Start/End: Complemental strand, 42597667 - 42597480
Alignment:
| Q |
187 |
gaggcaaaaagcattaacaag-caatatttttaaatattttccaaatgacaaag--ttccatactcaagcaaatgtaaactgtgtctgtgtccaagtact |
283 |
Q |
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|||||||||||||| || || || |||||||||||| | | ||||||||||| ||||||||||||||||||||| | ||||| |||||||||||| | |
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| T |
42597667 |
gaggcaaaaagcataaaaaaaacattatttttaaataatattcaaatgacaaaaaattccatactcaagcaaatgtagattgtgt-tgtgtccaagtatt |
42597569 |
T |
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| Q |
284 |
tcccaggaaggaaacagtaagcaatccatgaacaagagaagcta-----tatgtaaggattagtcaaatccttaaccaagggatttagcttcc |
371 |
Q |
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| || |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
42597568 |
t----ggcaggaaacattaagcaatccatgaaaaagagaagctagaattcatgtaaggattagtcaaatccttaaccgagggatttaccttcc |
42597480 |
T |
|
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