View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19111_high_9 (Length: 436)

Name: NF19111_high_9
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19111_high_9
NF19111_high_9
[»] chr1 (11 HSPs)
chr1 (19-423)||(46879034-46879446)
chr1 (43-235)||(29922349-29922544)
chr1 (33-214)||(5055917-5056099)
chr1 (287-376)||(29920734-29920823)
chr1 (38-170)||(6850145-6850281)
chr1 (311-376)||(6850642-6850707)
chr1 (316-376)||(3154821-3154881)
chr1 (62-142)||(37285479-37285560)
chr1 (44-142)||(38863434-38863533)
chr1 (122-235)||(3155195-3155310)
chr1 (98-143)||(26733425-26733471)
[»] chr4 (17 HSPs)
chr4 (38-235)||(37385729-37385932)
chr4 (37-235)||(42478121-42478318)
chr4 (38-235)||(31416518-31416717)
chr4 (46-235)||(48513365-48513556)
chr4 (37-235)||(29820148-29820348)
chr4 (47-225)||(52488655-52488836)
chr4 (313-376)||(42477791-42477854)
chr4 (40-235)||(48473418-48473615)
chr4 (287-376)||(37385383-37385473)
chr4 (37-235)||(53409817-53410013)
chr4 (311-376)||(31417009-31417074)
chr4 (311-376)||(52489087-52489152)
chr4 (311-376)||(53409454-53409519)
chr4 (44-141)||(33748237-33748335)
chr4 (311-376)||(48512995-48513060)
chr4 (312-370)||(29819826-29819884)
chr4 (44-139)||(54453868-54453964)
[»] chr6 (6 HSPs)
chr6 (38-235)||(27335447-27335646)
chr6 (38-235)||(27396187-27396386)
chr6 (62-142)||(18058415-18058496)
chr6 (311-367)||(27335955-27336011)
chr6 (311-367)||(27396695-27396751)
chr6 (38-142)||(7695185-7695290)
[»] chr8 (6 HSPs)
chr8 (37-235)||(9232818-9233020)
chr8 (311-376)||(9233329-9233394)
chr8 (40-120)||(32039052-32039132)
chr8 (44-142)||(30152403-30152502)
chr8 (44-142)||(31664819-31664918)
chr8 (98-142)||(35176397-35176442)
[»] chr3 (8 HSPs)
chr3 (38-235)||(26251182-26251381)
chr3 (311-374)||(49015938-49016001)
chr3 (44-141)||(7944225-7944323)
chr3 (39-143)||(49015465-49015569)
chr3 (44-142)||(19647627-19647726)
chr3 (311-376)||(26250840-26250905)
chr3 (180-235)||(49015592-49015647)
chr3 (199-235)||(24741233-24741269)
[»] chr2 (6 HSPs)
chr2 (45-235)||(34024743-34024936)
chr2 (44-143)||(14360106-14360205)
chr2 (180-231)||(23761098-23761149)
chr2 (59-142)||(7000447-7000531)
chr2 (334-376)||(34025237-34025279)
chr2 (62-139)||(42481219-42481296)
[»] chr7 (2 HSPs)
chr7 (37-144)||(42010683-42010790)
chr7 (312-376)||(42011124-42011188)
[»] chr5 (6 HSPs)
chr5 (62-170)||(32772349-32772461)
chr5 (311-376)||(32771590-32771655)
chr5 (44-142)||(14136402-14136501)
chr5 (44-141)||(11782165-11782263)
chr5 (62-142)||(1463735-1463816)
chr5 (62-141)||(40323394-40323474)
[»] scaffold0006 (1 HSPs)
scaffold0006 (312-376)||(282531-282595)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 46879034 - 46879446
Alignment:
Q  19 acttttgcatctagatcaaggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcccta 118  Q
    |||||||||||||||||||| || ||||||||| ||| |||||||||||||||| |||||| ||| || |||||||||| ||||||||||||||||||||    
T  46879034 acttttgcatctagatcaagatttcgtataaaatgaacccatgaaaatattggtccatgatggactaattttttcaatggttagattatatgaatcccta 46879133  T
Q  119 aattttatcatggtctataaacactctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatatt 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||| |||||||||||||||||||||||    
T  46879134 aattttatcatggtctataaacactctaacccatcttcccttataattttattaaaaaaaatcattttcaccctttataattattataatttaaaatatt 46879233  T
Q  219 acatatttttacggtaa--nnnnnnnnnnnnnnntttggtacagtaatttttgttgttggtattataatt------cggttatcaattatttannnnnnn 310  Q
    ||||||||||||| |||                 ||||||||||||||||||||||||||||||||||||      |||||||||||||||||           
T  46879234 acatatttttacgttaattttcttttggaaaaattttggtacagtaatttttgttgttggtattataattcagttacggttatcaattatttattttttt 46879333  T
Q  311 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaatattcatggtcactaatacacatataaacatcaaca 410  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46879334 cattgtttttgtagaatcgtcaaattatccattcaaaaagaataataacagcagtaataataaatattcatggtcactaatacacatataaacatcaaca 46879433  T
Q  411 tgcatcaaccttc 423  Q
    |||||||||||||    
T  46879434 tgcatcaaccttc 46879446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 29922544 - 29922349
Alignment:
Q  43 cgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac 142  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  29922544 cgtataaaatgaatccatggaaatattggttcatgatggaccaattttttcaatggttagattatatgaacccttaaattttatcatggtctataaacac 29922445  T
Q  143 tctaacccatcttctcttataattttat---ttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 235  Q
    |||||||||||||| |||||||||||||            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29922444 tctaacccatcttcccttataattttataaaaaaaaaaaatcattttcaccctttataattattataatttaaaatattacatatttttacggtaa 29922349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 5056099 - 5055917
Alignment:
Q  33 atcaaggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggt 132  Q
    ||||||||||| ||||||| ||| |||||||||||||||| |||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||    
T  5056099 atcaaggttccttataaaatgaacccatgaaaatattggtccatgatggaccaa-tttttcaatggttagattatatgaatccctaaatcttatcatggt 5056001  T
Q  133 ctataaacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaa 214  Q
    ||||||||||    |||||||||| || |||||| ||||||  |       ||||||| ||||||| |||||||||||||||||||    
T  5056000 ctataaacactaaatctaacccatattttcttatcatttta--taaaaaaatcatttttaccctttataattattataatttaaaa 5055917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 287 - 376
Target Start/End: Complemental strand, 29920823 - 29920734
Alignment:
Q  287 cggttatcaattatttannnnnnncattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    |||||||||||||||||       ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  29920823 cggttatcaattatttatttttttcattgtttttgtagaatagtcatattatcctttcaaaaagaataataatagcagtaataataaata 29920734  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 6850145 - 6850281
Alignment:
Q  38 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 137  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| || ||| |||||||| | |||||||| ||||  ||| ||||||||||||| ||||||    
T  6850145 ggttccttataaaatgaacccatgagaatattggtccatgatggatcaattttttcaacggttagattagatgagccccaaaattttatcatgatctata 6850244  T
Q  138 aa----cactctaacccatcttctcttataattttat 170  Q
    ||    || |||||||||||||| ||||| |||||||    
T  6850245 aacattcaatctaacccatcttcccttatcattttat 6850281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 6850642 - 6850707
Alignment:
Q  311 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||| |||||||||||||||||    
T  6850642 cattgtttttttagaatagtcatattatcctttccaaaagactaataacagcagtaataataaata 6850707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 3154881 - 3154821
Alignment:
Q  316 tttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    ||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  3154881 tttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 3154821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 37285479 - 37285560
Alignment:
Q  62 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 142  Q
    ||||||||||| |||||| |||||| ||||   || ||||||| |||||||||| | |||||||||||||||||||||||||    
T  37285479 aaaatattggtccatgatggaccaatttttggtatcattagatcatatgaatccaccaaattttatcatggtctataaacac 37285560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 38863434 - 38863533
Alignment:
Q  44 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 142  Q
    |||||||| ||| | || |||||||||||  ||||| |||||| |||||  |  ||||||| |||||||||| | |||||||||||||||||||||||||    
T  38863434 gtataaaatgaacctataaaaatattggtctatgatggaccaattttttgtaccattagatcatatgaatccaccaaattttatcatggtctataaacac 38863533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 3155310 - 3155195
Alignment:
Q  122 tttatcatggtctataaacactc----taacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatat 217  Q
    ||||||||| |||||||||||||    |||||||||||| ||||| |||||||         ||||||| | ||||| |||||||| |||||||||||||    
T  3155310 tttatcatgatctataaacactcaatctaacccatcttcccttatcattttat--aaaaaattcatttttatcctttataattattttaatttaaaatat 3155213  T
Q  218 tacatatttttacggtaa 235  Q
    |||||||| ||| |||||    
T  3155212 tacatattgttatggtaa 3155195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 26733471 - 26733425
Alignment:
Q  98 attagattatatgaatcc-ctaaattttatcatggtctataaacact 143  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||    
T  26733471 attagattatatgaacccaccaaattttatcatggtctataaacact 26733425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 38 - 235
Target Start/End: Complemental strand, 37385932 - 37385729
Alignment:
Q  38 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 137  Q
    |||||||||||||| |||| |||| ||||||||||  |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37385932 ggttccgtataaaatgaattcatggaaatattggtctatgatagaccaattttttcaatgattagattatatgaacccctaaattttatcatggtctata 37385833  T
Q  138 aacactctaacccatcttctcttataattttat------ttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacg 231  Q
    ||||||||||||||||||| |||||||| ||||               ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37385832 aacactctaacccatcttcccttataatattataaaaaaaaaaaaaaatcattttcaccctttataattattataatttaaaatattacatatttttacg 37385733  T
Q  232 gtaa 235  Q
    ||||    
T  37385732 gtaa 37385729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 42478318 - 42478121
Alignment:
Q  37 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 136  Q
    ||||||||||||||| ||| |||||||||||||| |||||||| || ||| |||||||||||||||||||||| || || ||||||||||||||||||||    
T  42478318 aggttccgtataaaatgaacccatgaaaatattgattcatgatggatcaattttttcaatgattagattatataaacccttaaattttatcatggtctat 42478219  T
Q  137 aaacactctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 235  Q
    | ||||||||| |||||||| |||||||||||| |        ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  42478218 acacactctaatccatcttcccttataatttta-taaaaaaaatcattttcaccctttataattatgataatttaaaatattacatatttttacggtaa 42478121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 31416518 - 31416717
Alignment:
Q  38 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 137  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| |||||| ||||| || | |||||||| |||||  || ||||||||||||| ||||||    
T  31416518 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaatttttttaacggttagattacatgaactccaaaattttatcatgatctata 31416617  T
Q  138 aacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 233  Q
    |||||    |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||    
T  31416618 aacactcaatctaacccatcttcccttatcatttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatggt 31416715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 235
Target Start/End: Complemental strand, 48513556 - 48513365
Alignment:
Q  46 ataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac--- 142  Q
    |||||| ||| |||||| ||||||||| |||||| |||||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||       
T  48513556 ataaaatgaacccatgagaatattggtccatgatggaccaattttttcaacggttagattagatgaaccccaaaattttatcatgatctataaacactca 48513457  T
Q  143 -tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 235  Q
     |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| | ||||||||||||||||||| ||| |||||    
T  48513456 atctaacccatcttcccttatcatttta--taaaaaattcatttttaccctttataattattttcatttaaaatattacatattgttatggtaa 48513365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 29820348 - 29820148
Alignment:
Q  37 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 136  Q
    ||||||| | ||||| ||| |||||| |||||||||| ||||| |||||| |||||||| | ||| |||| ||||| ||| ||||||||||||| |||||    
T  29820348 aggttccttgtaaaatgaacccatgagaatattggtttatgatggaccaattttttcaacggttaaattagatgaaccccaaaattttatcatgatctat 29820249  T
Q  137 aaacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacgg 232  Q
    ||||||    ||||||||||||||  |||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| ||    
T  29820248 aaacactcaatctaacccatcttcctttatcatttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatgg 29820151  T
Q  233 taa 235  Q
    |||    
T  29820150 taa 29820148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 52488655 - 52488836
Alignment:
Q  47 taaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacactc-- 144  Q
    ||||| ||||| |||| |||||||||  | ||| |||||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||||      
T  52488655 taaaatgaatctatgagaatattggtctaagatggaccaattttttcaacggttagattagatgaaccccaaaattttatcatgatctataaacactcaa 52488754  T
Q  145 --taacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatt 225  Q
      |||||||||||| ||||| |||||| |        ||||||| ||||||| |||||||| |||||||||||||||||||||    
T  52488755 tttaacccatcttcccttatcatttta-taaaaaaaatcatttttaccctttataattattttaatttaaaatattacatatt 52488836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 42477854 - 42477791
Alignment:
Q  313 ttgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  42477854 ttgtttttgtagaatagtcatattatcctttcaaaaataataataatagcagtaataataaata 42477791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 48473418 - 48473615
Alignment:
Q  40 ttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaa 139  Q
    |||| ||||||| ||| |||| | |||||||||| | ||| || ||| |||||||| | |||||||| ||||| ||| ||||||||||||| ||||| ||    
T  48473418 ttccttataaaatgaaaccataagaatattggtttacgatggatcaattttttcaacggttagattagatgaaccccaaaattttatcatgatctatgaa 48473517  T
Q  140 ----cactctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 235  Q
        || |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||||    
T  48473518 tactcaatctaacccatcttcccttattatttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatggtaa 48473615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 376
Target Start/End: Complemental strand, 37385473 - 37385383
Alignment:
Q  287 cggttatcaattatttannnnnnncattgtttttgtagaatcgtcaaattatcctttca-aaaagaataataatagcagtaataataaata 376  Q
    |||||||||||||||||       |||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||||||    
T  37385473 cggttatcaattatttatttttttcattgtttttgtagaatcgtcatattatcctttcaaaaaaaaataataataacagtaataataaata 37385383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 53410013 - 53409817
Alignment:
Q  37 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 136  Q
    ||||||| ||||||| ||| |||||| ||||||| || | ||| || ||| |||||||| | |||||||| ||||||||| ||||||||||||| |||||    
T  53410013 aggttccttataaaatgaacccatgagaatattgatttaagatggatcaattttttcaacggttagattaaatgaatcccaaaattttatcatgatctat 53409914  T
Q  137 aaacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacgg 232  Q
    ||||||    ||||||||||| | |||    ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| ||    
T  53409913 aaacactcaatctaacccatcctttct----atttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatgg 53409820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 31417009 - 31417074
Alignment:
Q  311 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  31417009 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 31417074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 52489087 - 52489152
Alignment:
Q  311 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  52489087 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 52489152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 53409519 - 53409454
Alignment:
Q  311 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  53409519 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 53409454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 33748335 - 33748237
Alignment:
Q  44 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccct-aaattttatcatggtctataaaca 141  Q
    |||||||| ||| | || |||||||||||||||||| |||||| |||||  |  ||||||| |||||||||| | ||||||||||||||||||||||||    
T  33748335 gtataaaatgaacctataaaaatattggttcatgatggaccaattttttgtaccattagatcatatgaatccatcaaattttatcatggtctataaaca 33748237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 48513060 - 48512995
Alignment:
Q  311 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    |||||||||| |||||| |||| ||| ||||||| |||||| ||||||||||||||||||||||||    
T  48513060 cattgtttttttagaatagtcatattttcctttccaaaagactaataatagcagtaataataaata 48512995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 29819884 - 29819826
Alignment:
Q  312 attgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataa 370  Q
    ||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||    
T  29819884 attgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataa 29819826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 54453868 - 54453964
Alignment:
Q  44 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccct-aaattttatcatggtctataaa 139  Q
    |||||||| ||| | || |||||||||||| ||||| || ||| |||||  |  ||||||| ||||||| || | ||||||||||||||||||||||    
T  54453868 gtataaaatgaacctataaaaatattggtttatgatggatcaattttttgtaccattagatcatatgaacccatcaaattttatcatggtctataaa 54453964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 27335447 - 27335646
Alignment:
Q  38 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 137  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| |||||| |||||||||  |||||||| ||||| ||| ||||||||||||| ||||||    
T  27335447 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaatagttagattagatgaaccccaaaattttatcatgatctata 27335546  T
Q  138 aacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 233  Q
    |||||    |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||    
T  27335547 aacactcaatctaacccatcttcccttatcatttta--taaaaaaatcatttttaccctttataattattttaatttaaaatattacatattgttatggt 27335644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 27396187 - 27396386
Alignment:
Q  38 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 137  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| |||||| |||||||||  |||||||| ||||| ||| ||||||||||||| ||||||    
T  27396187 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaatagttagattagatgaaccccaaaattttatcatgatctata 27396286  T
Q  138 aacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 233  Q
    |||||    |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||    
T  27396287 aacactcaatctaacccatcttcccttatcatttta--taaaaaaatcatttttaccctttataattattttaatttaaaatattacatattgttatggt 27396384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 18058415 - 18058496
Alignment:
Q  62 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 142  Q
    ||||||||||| |||||| |||||| |||||  |  ||||||| |||||||||| | |||||||||||||||||||||||||    
T  18058415 aaaatattggtccatgatggaccaattttttgtaccattagatcatatgaatccaccaaattttatcatggtctataaacac 18058496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 27335955 - 27336011
Alignment:
Q  311 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaa 367  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||||||||||    
T  27335955 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaa 27336011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 27396695 - 27396751
Alignment:
Q  311 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaa 367  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||||||||||    
T  27396695 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaa 27396751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 7695290 - 7695185
Alignment:
Q  38 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctat 136  Q
    ||||| |||||||| ||| |||| || ||||||||  ||||| |||||   ||||||||| |||||| |||| || || |||||| ||||||||||| ||    
T  7695290 ggttctgtataaaatgaacccatcaagatattggtcgatgatggaccagtcttttcaatgcttagatcatatcaacccactaaatcttatcatggtccat 7695191  T
Q  137 aaacac 142  Q
    ||||||    
T  7695190 aaacac 7695185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 9232818 - 9233020
Alignment:
Q  37 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 136  Q
    ||||||| ||||||| ||| |||||| ||||||| | |||||| || ||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||    
T  9232818 aggttccttataaaatgaacccatgagaatattgatccatgatggatcaattttttcaacggttagattagatgaaccccaaaattttatcatgatctat 9232917  T
Q  137 aaacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacgg 232  Q
    ||||||    |||||||||||||| ||||| |||||||         ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| ||    
T  9232918 aaacactcaatctaacccatcttcccttatcattttataaaaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatgg 9233017  T
Q  233 taa 235  Q
    |||    
T  9233018 taa 9233020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 9233329 - 9233394
Alignment:
Q  311 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  9233329 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 9233394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 32039132 - 32039052
Alignment:
Q  40 ttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaa 120  Q
    |||| ||||||| ||| ||||||||||||||||| ||||| || ||| |||||||||| ||||||||||||||| ||||||    
T  32039132 ttccttataaaatgaacccatgaaaatattggtttatgatggatcaattttttcaatggttagattatatgaattcctaaa 32039052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 30152502 - 30152403
Alignment:
Q  44 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 142  Q
    |||||||| ||| |||| || |||||||| |||||| ||||||  ||||||||| ||||||||||| || || |||||| ||| ||||||| ||||||||    
T  30152502 gtataaaatgaacccatcaagatattggtccatgatggaccaatcttttcaatgtttagattatatcaacccactaaatcttaccatggtccataaacac 30152403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 31664918 - 31664819
Alignment:
Q  44 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaa-tccctaaattttatcatggtctataaacac 142  Q
    |||||||| ||| | || ||||||||||| |||||| || ||| |||||  |  ||||||| ||||||| || | |||||||||||||||||||||||||    
T  31664918 gtataaaatgaacctataaaaatattggtccatgatggaacaattttttgtaccattagatcatatgaactcaccaaattttatcatggtctataaacac 31664819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 35176397 - 35176442
Alignment:
Q  98 attagattatatgaatcc-ctaaattttatcatggtctataaacac 142  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||    
T  35176397 attagattatatgaatccaccaaattttatcatggtccataaacac 35176442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 235
Target Start/End: Complemental strand, 26251381 - 26251182
Alignment:
Q  38 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 137  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| || ||| |||||||| | |||||||| ||||| ||| ||||||||||||| ||||||    
T  26251381 ggttccttataaaatgaacccatgagaatattggtccatgatggatcaattttttcaacggttagattaaatgaaccccaaaattttatcatgatctata 26251282  T
Q  138 aacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 233  Q
    |||||    |||||||||||||| ||||| ||||||  |       ||||||| ||| ||| |||||||| ||||||||||||||||||||| ||| |||    
T  26251281 aacactcaatctaacccatcttcccttatcatttta--taaaaaattcatttttaccttttataattattttaatttaaaatattacatattgttatggt 26251184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 374
Target Start/End: Original strand, 49015938 - 49016001
Alignment:
Q  311 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaa 374  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||    
T  49015938 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaa 49016001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 7944225 - 7944323
Alignment:
Q  44 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaaca 141  Q
    |||||||| ||| | || |||||||||||||||||| |||||| |||||  |  ||||||| |||||||||| | ||||||||||||||||||||||||    
T  7944225 gtataaaatgaacctataaaaatattggttcatgatggaccaattttttgtaccattagatcatatgaatccaccaaattttatcatggtctataaaca 7944323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 49015465 - 49015569
Alignment:
Q  39 gttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataa 138  Q
    ||||| ||||||| |||||  ||| |||||||||  ||||| |||||| |||||||| | |||||||| ||||| | | ||||||||||||| |||||||    
T  49015465 gttccttataaaatgaatctctgagaatattggtctatgatggaccaattttttcaacggttagattaaatgaacctcaaaattttatcatgatctataa 49015564  T
Q  139 acact 143  Q
    |||||    
T  49015565 acact 49015569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 19647627 - 19647726
Alignment:
Q  44 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 142  Q
    |||||||| ||| | || ||||||||||| |||||| ||||||||||||  |  ||||||| ||||||| || | |||||||||||||||||||||||||    
T  19647627 gtataaaatgaacctataaaaatattggtccatgatggaccaaatttttgtaccattagatcatatgaacccaccaaattttatcatggtctataaacac 19647726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 26250905 - 26250840
Alignment:
Q  311 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||| ||| |||||||||||    
T  26250905 cattgtttttttagaatagtcatattatcctttccaaaagactaataataacagcaataataaata 26250840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 49015592 - 49015647
Alignment:
Q  180 tcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 235  Q
    ||||||| | ||||| |||||||| ||||||||||||||||||||| ||| |||||    
T  49015592 tcatttttatcctttataattattttaatttaaaatattacatattgttatggtaa 49015647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 24741269 - 24741233
Alignment:
Q  199 ttattataatttaaaatattacatatttttacggtaa 235  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  24741269 ttattataatttaaaatattacatattgttatggtaa 24741233  T

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Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 235
Target Start/End: Original strand, 34024743 - 34024936
Alignment:
Q  45 tataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacactc 144  Q
    ||||||| ||| ||||||||||||| ||  || || ||||||  ||||||||  ||||||||||||||||||||||| |||||||| ||||||||||||     
T  34024743 tataaaatgaacccatgaaaatatttgtctattatggaccaatattttcaatagttagattatatgaatccctaaatcttatcatgatctataaacacta 34024842  T
Q  145 ----taacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 235  Q
        ||||||||||| |||||| |||||| |        ||||||| ||||||| ||||||||||||||||||||| |||||||| |||| ||||    
T  34024843 aatttaacccatcttttcttatcatttta-taaaaaaaatcatttttaccctttataattattataatttaaaatactacatattattactgtaa 34024936  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 14360106 - 14360205
Alignment:
Q  44 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacact 143  Q
    |||||||| ||| |||||||||||||||| ||| ||||||||| |||||||| | |||||||||||||| | |||||| ||| |||| ||||||||||||    
T  14360106 gtataaaatgaacccatgaaaatattggtccatcatagaccaattttttcaacggttagattatatgaaccactaaatcttaccatgatctataaacact 14360205  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 23761098 - 23761149
Alignment:
Q  180 tcattttcaccctttgtaattattataatttaaaatattacatatttttacg 231  Q
    ||||||| | ||||| |||||||||||||||||||||||||||||| |||||    
T  23761098 tcatttttagcctttataattattataatttaaaatattacatattgttacg 23761149  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 7000531 - 7000447
Alignment:
Q  59 atgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatc-cctaaattttatcatggtctataaacac 142  Q
    ||||||||||||||  ||||| |||||| |||||  |  |||||||||||||||||  | ||||||||| |||||||||||||||    
T  7000531 atgaaaatattggtctatgatggaccaattttttgtaccattagattatatgaatctaccaaattttattatggtctataaacac 7000447  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Original strand, 34025237 - 34025279
Alignment:
Q  334 attatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||    
T  34025237 attatactttccaaaagaatagtaatagcagtaataataaata 34025279  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 42481219 - 42481296
Alignment:
Q  62 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaa 139  Q
    ||||||||||| |||||| |||||| ||||| |   ||||||| |||||||||| | ||||||||||||||||||||||    
T  42481219 aaaatattggtccatgatggaccaatttttttacc-attagatcatatgaatccaccaaattttatcatggtctataaa 42481296  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 42010683 - 42010790
Alignment:
Q  37 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 136  Q
    ||||||| ||||||| ||| |||||| ||||||||| |||||| |||||| |||||||| | ||||| || ||||| ||| ||||||||||||| |||||    
T  42010683 aggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaacggttagaatagatgaaccccaaaattttatcatgatctat 42010782  T
Q  137 aaacactc 144  Q
    ||||||||    
T  42010783 aaacactc 42010790  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 42011124 - 42011188
Alignment:
Q  312 attgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    ||||||||| || ||| |||| ||||||||||| |||||| |||||||||||| |||||||||||    
T  42011124 attgtttttttaaaatagtcatattatcctttccaaaagactaataatagcagcaataataaata 42011188  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 32772461 - 32772349
Alignment:
Q  62 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac----tctaacccatcttct 157  Q
    |||||||||||  ||||| |||||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||    ||||||||||||||     
T  32772461 aaaatattggtctatgatggaccaattttttcaacggttagattagatgaaccccaaaattttatcatgatctataaacactcaatctaacccatcttcc 32772362  T
Q  158 cttataattttat 170  Q
    ||||| |||||||    
T  32772361 cttatcattttat 32772349  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 32771655 - 32771590
Alignment:
Q  311 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    |||||||||| |||||| |||| ||| ||||||| |||||| ||||||||||||||||||||||||    
T  32771655 cattgtttttttagaatagtcatattttcctttccaaaagactaataatagcagtaataataaata 32771590  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 14136501 - 14136402
Alignment:
Q  44 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 142  Q
    |||||||| ||| | || |||||||||||  ||||| |||||| |||||  |  ||||||| ||||||| || | |||||||||||||||||||||||||    
T  14136501 gtataaaatgaacctataaaaatattggtctatgatggaccaattttttgtaccattagatcatatgaacccaccaaattttatcatggtctataaacac 14136402  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 11782263 - 11782165
Alignment:
Q  44 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaaca 141  Q
    |||||||| ||| | || ||||||||||| |||||| |||||| |||||  |   |||||| ||||||| || | ||||||||||||||||||||||||    
T  11782263 gtataaaatgaacctataaaaatattggtccatgatggaccaattttttgtaccgttagatcatatgaacccaccaaattttatcatggtctataaaca 11782165  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 1463816 - 1463735
Alignment:
Q  62 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 142  Q
    ||||||||||| |||||| |||||| ||||   || ||||||| ||||||| || | ||||||||||||| |||||||||||    
T  1463816 aaaatattggtccatgatggaccaatttttgatatcattagatcatatgaacccaccaaattttatcatgatctataaacac 1463735  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 40323474 - 40323394
Alignment:
Q  62 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaa-tccctaaattttatcatggtctataaaca 141  Q
    |||||||||||  ||||| |||||| |||||  |  ||||||||||||||| || | |||| |||||||||||||||||||    
T  40323474 aaaatattggtctatgatggaccaattttttgtaccattagattatatgaactcaccaaatcttatcatggtctataaaca 40323394  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 282595 - 282531
Alignment:
Q  312 attgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 376  Q
    ||||||||  |||||| |||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  282595 attgttttcttagaatagtcatattatcctttttaaaagactaataatagcagtaataataaata 282531  T

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