View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_low_14 (Length: 409)
Name: NF19111_low_14
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 32871704 - 32871429
Alignment:
| Q |
16 |
atatatggcaaataaatgaagattatataattcaagattctacattcccaattaaatcaggcaatatattttgccttatgtgtcgtataatcagatatga |
115 |
Q |
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| T |
32871704 |
atatatggcaaataaatgaagattatataattcaagattctacattcccaattaaatcaggcaatatattttgccttatgtgtcgtataatcagatatga |
32871605 |
T |
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| Q |
116 |
gtttagcttattaatacttgatactacatctattcatttttcattgtttttaaggttatgttacacnnnnnnntaaaataatagtcttgttacatctatt |
215 |
Q |
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| T |
32871604 |
gtttagcttattaatacttgatactacatctattcatttttcattgtttttaaggttatcttacacaaaaaaataaaataatagtcttgttacatctatt |
32871505 |
T |
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| Q |
216 |
tctctatcgagagtaaacagataagtttattattttactaaacaacatgtttcgattgggctttgccctcttttgta |
292 |
Q |
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| T |
32871504 |
tctctatcgagagtaaacagataggtttatta-tttactaaacaacatgtttcgattgggctttgccctcttttgta |
32871429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 32871394 - 32871321
Alignment:
| Q |
305 |
tattatttagaagaagaagaaattattttgaaatgaatttcacnnnnnnnctttccaactatatctttcaatta |
378 |
Q |
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| T |
32871394 |
tattatttagaagaagaaaaaattattttgaaatgaatttcacattttttctttccaactatatctttcaatta |
32871321 |
T |
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