View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19111_low_16 (Length: 363)

Name: NF19111_low_16
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19111_low_16
NF19111_low_16
[»] chr2 (2 HSPs)
chr2 (9-226)||(15446899-15447112)
chr2 (291-345)||(15444981-15445035)
[»] chr4 (1 HSPs)
chr4 (291-343)||(33465153-33465205)
[»] chr5 (2 HSPs)
chr5 (291-342)||(23978294-23978345)
chr5 (294-342)||(36427568-36427616)
[»] chr8 (4 HSPs)
chr8 (293-343)||(17025051-17025101)
chr8 (293-343)||(17555543-17555593)
chr8 (292-345)||(8319463-8319516)
chr8 (293-342)||(23549396-23549445)
[»] chr3 (1 HSPs)
chr3 (291-345)||(6607568-6607622)
[»] scaffold0060 (1 HSPs)
scaffold0060 (292-345)||(48855-48908)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 15447112 - 15446899
Alignment:
Q  9 gagatgaagtcaaagatcataaataaataaataaattgtgcacaagcattatattccaggaacatctatgtatgttgcatgaaggagagttatgttgaaa 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15447112 gagaagaagtcaaagatcataaataaataaataaattgtgcacaagcattatattccaggaacatctatgtatgttgcatgaaggagagttatgttgaaa 15447013  T
Q  109 atgcaattgttccgatttaaatttgatggcattaattgaattttcaaccttatatattttcatttttaaagactgttttgaaaagaagcgaaatacatca 208  Q
    ||||||||||||||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  15447012 atgcaattgttccgatttaaatttgttggc----attgaattttcaaccttatatattttcatttttaaagactattttgaaaagaagcgaagtacatca 15446917  T
Q  209 tccgatcattattataag 226  Q
    | || ||| |||||||||    
T  15446916 ttcggtcactattataag 15446899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 15445035 - 15444981
Alignment:
Q  291 cgcttgttcacatgataaatttttacatgacaaatattacaatcacacaacttat 345  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15445035 cgcttgttcacatgataaatttttacatgtcaaatattacaatcacacaacttat 15444981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 33465205 - 33465153
Alignment:
Q  291 cgcttgttcacatgataaatttttacatgacaaatattacaatcacacaactt 343  Q
    ||||||||||||||||||||||| | ||| ||||||||| |||||||||||||    
T  33465205 cgcttgttcacatgataaattttgatatgtcaaatattaaaatcacacaactt 33465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 23978345 - 23978294
Alignment:
Q  291 cgcttgttcacatgataaatttttacatgacaaatattacaatcacacaact 342  Q
    ||||||||||| ||||||||||| | ||| ||||||||| ||||||||||||    
T  23978345 cgcttgttcacttgataaattttgatatgtcaaatattaaaatcacacaact 23978294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 36427568 - 36427616
Alignment:
Q  294 ttgttcacatgataaatttttacatgacaaatattacaatcacacaact 342  Q
    |||||||||||| ||||||| | ||| ||||||||| ||||||||||||    
T  36427568 ttgttcacatgacaaattttgatatgtcaaatattaaaatcacacaact 36427616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 17025051 - 17025101
Alignment:
Q  293 cttgttcacatgataaatttttacatgacaaatattacaatcacacaactt 343  Q
    ||||||||||| ||||||||| | ||| ||||||||| |||||||||||||    
T  17025051 cttgttcacatcataaattttgatatgtcaaatattaaaatcacacaactt 17025101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 17555543 - 17555593
Alignment:
Q  293 cttgttcacatgataaatttttacatgacaaatattacaatcacacaactt 343  Q
    ||||||||||| ||||||||| | ||| ||||||||| |||||||||||||    
T  17555543 cttgttcacatcataaattttgatatgtcaaatattaaaatcacacaactt 17555593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 8319516 - 8319463
Alignment:
Q  292 gcttgttcacatgataaatttttacatgacaaatattacaatcacacaacttat 345  Q
    |||||||| ||| ||||||||| | ||| ||||||||| |||||||||||||||    
T  8319516 gcttgttctcataataaattttgatatgtcaaatattaaaatcacacaacttat 8319463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 23549445 - 23549396
Alignment:
Q  293 cttgttcacatgataaatttttacatgacaaatattacaatcacacaact 342  Q
    ||||||| |||||||||||||  |||| ||||||||| ||||||||||||    
T  23549445 cttgttcgcatgataaattttgtcatgtcaaatattaaaatcacacaact 23549396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 6607622 - 6607568
Alignment:
Q  291 cgcttgttcacatgataaatttttacatgacaaatattacaatcacacaacttat 345  Q
    ||||||||||||| |||| |||| | ||| ||||||||| |||||||||||||||    
T  6607622 cgcttgttcacataataagttttgatatgtcaaatattaaaatcacacaacttat 6607568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 48908 - 48855
Alignment:
Q  292 gcttgttcacatgataaatttttacatgacaaatattacaatcacacaacttat 345  Q
    |||||||| ||| ||||||||| | ||| ||||||||| |||||||||||||||    
T  48908 gcttgttctcataataaattttgatatgtcaaatattaaaatcacacaacttat 48855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University