View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_low_19 (Length: 286)
Name: NF19111_low_19
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_low_19 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 101 - 286
Target Start/End: Original strand, 36470228 - 36470413
Alignment:
| Q |
101 |
tcttaatcttttcttctctatcctcaatcctgtccactattacactccacccttgcattttccctccccttatctgatttctaataacaaatagttctta |
200 |
Q |
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| T |
36470228 |
tcttaatcttttattctcaatcctcaatcctgtccactattacactccacccttgcattttccctccccttatctgatttctaataataaatagtgctta |
36470327 |
T |
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| Q |
201 |
tgtactcacagttgtgcattcacctttcatacatccattccatatagaaaaattcgacacttcattctcatgaatccgtctttaat |
286 |
Q |
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| T |
36470328 |
tgtactcacagttgtgcattcacctttcatacatccattccatatagaaaaattcgacacttcattctcatgaatccgtctttaat |
36470413 |
T |
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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 36469936 - 36470006
Alignment:
| Q |
35 |
aaaggaaatatacctttctcgctcatccaactttttaaataagagcgtcatttacacattttagcatctta |
105 |
Q |
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| T |
36469936 |
aaaggaaatatatctttctcgctcagccaactttttaaataagagcgtcatttacacattttagcatctta |
36470006 |
T |
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