View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_low_2 (Length: 589)
Name: NF19111_low_2
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 26 - 585
Target Start/End: Complemental strand, 10848887 - 10848328
Alignment:
| Q |
26 |
ctttcatgtcttcaattttcagacggcttgaatcatcatccatatcattgtcaaatggaatccctatcttattcaagtctattctgtcccaaaggtcatc |
125 |
Q |
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| T |
10848887 |
ctttcatatcttcaattttcagacggcttgaatcatcgtccatatcatcgtcaaatggaatccctatcttattcaagtctattctgtcccaaaggtcatc |
10848788 |
T |
|
| Q |
126 |
caggacgacaagggtgttctccctctctttctttaacctccttcttagacgatctgctctcacagtctcaccttccccttccatattcaatcctaacacg |
225 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10848787 |
catgacgacaagggtgttctccctctctttctttaacctccttcttagacgatctgctctcacagtctcaccttccccttccaaattcaatcctaacacg |
10848688 |
T |
|
| Q |
226 |
tacgcaatttcttcctggatttttcgcaggttgggattgttagttatttctactttaactaccacactgaacaacttcttgacttgagctttcttaacaa |
325 |
Q |
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| T |
10848687 |
tacgcaatttcttcctggatttttcgcagattgggattgtcatttatttctactataactgccacattgaacaacttcttgacttgagctttcttaacaa |
10848588 |
T |
|
| Q |
326 |
tttctttgattaaagtgctcttacccacaccacctggcccatgcactccaatcattctcactgtagaatcttctagtttttccattatgcttttaattgt |
425 |
Q |
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| T |
10848587 |
tttctttgattaaagtgctcttacccacaccacctggcccatgcactccaatcattctcgctgtagaatcttctagtttttccattatcctttcaattgt |
10848488 |
T |
|
| Q |
426 |
atcttttctggaaggaaattctacatagccatcattaaacaaatcagcatgcatagatgttggcttttgctgataggaaactccatcaaacttcgactcg |
525 |
Q |
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| T |
10848487 |
gcatgttctagaaccaaattctacatagccatcattaaacaaagcagcatgcatagatgttggcttttgctgataggaaactccatcaaacttcgactcg |
10848388 |
T |
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| Q |
526 |
tctattaatgacttgacatccactgccatcttctttgcttttctccctagtctatctctg |
585 |
Q |
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| T |
10848387 |
tctattaataacttgacatccactgccatcttctttgcttttctccctagtctatgtctg |
10848328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 69 - 585
Target Start/End: Complemental strand, 10880237 - 10879724
Alignment:
| Q |
69 |
atcattgtcaaatggaatccctatcttattcaagtctattctgtcccaaaggtcatccaggacgacaagggtgttctccctctctttctttaacctcctt |
168 |
Q |
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| T |
10880237 |
atcatcgtcaaatggaatccctatcttattcaagtctattctgtcccaaaggtcatccaggacgacaagggtgttcttcctctctttctttaacctcctt |
10880138 |
T |
|
| Q |
169 |
cttagacgatctgctctcacagtctcaccttccccttccatattcaatcctaacacgtacgcaatttcttcctggatttttcgcaggttgggattgttag |
268 |
Q |
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| T |
10880137 |
cttagacgatctgctctcacagtctcaccttccccttccaaattcaatcctaacacgtacgcaatttcttcctggatttttcgcaggttgggattgttag |
10880038 |
T |
|
| Q |
269 |
ttatttctactttaactaccacactgaacaacttcttgacttgagctttcttaacaatttctttgattaaagtgctcttacccacaccacctggcccatg |
368 |
Q |
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| T |
10880037 |
ttatttctactataactaccatactgaacaacttcttgacttgagctttcttaacaatttctttgattaaagtgctcttacccacaccacctggcccatg |
10879938 |
T |
|
| Q |
369 |
cactccaatcattctcactgtagaatcttctagtttttccattatgcttttaattgtatcttttctggaaggaaattctacatagccatcattaaacaaa |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
10879937 |
cactccaatcattctcactgtagaatcttctagtttttccattatgcttttaattgtatcttttctagaagcaaattctacatagccatcattaaacaaa |
10879838 |
T |
|
| Q |
469 |
tcagcatgcatagatgttggcttttgctgataggaaactccatcaaacttcgactcgtctattaatgacttgacatccactgccatcttctttgcttttc |
568 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10879837 |
gcaacatgcatagatgttggcttttgctgataggaaactccatcaaactt---ctcgtctattaataacttgacatccactgccatcttctttgcttttc |
10879741 |
T |
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| Q |
569 |
tccctagtctatctctg |
585 |
Q |
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|||||||||||| |||| |
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| T |
10879740 |
tccctagtctatgtctg |
10879724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 10880331 - 10880282
Alignment:
| Q |
17 |
agttagagcctttcatgtcttcaattttcagacggcttgaatcatcatcc |
66 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10880331 |
agttagagcctttcatgtcttgaattttcagacggcttgaatcatcatcc |
10880282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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