View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_low_20 (Length: 280)
Name: NF19111_low_20
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 7330393 - 7330631
Alignment:
| Q |
15 |
gacacatgacaaagataatctcagaggtgtccttacatcaaaggttgtaagagatcgagaagatttttgcaacaatgatatgaaggtgtcatatacaacc |
114 |
Q |
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| T |
7330393 |
gacacatgacaaagataatctcagaggtgtctttacatcaaaggttgtaagagatcgagaagatttttgcaacaatgataggaaggtgtcatatgcaacc |
7330492 |
T |
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| Q |
115 |
ggagatccagggtatattgatggaagagaatgaactatgcattgtttttgtcacacactacgggtgtacgggtgtgtttgtttataaggaaaga---tag |
211 |
Q |
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| T |
7330493 |
ggagatccaaggtatattgatggaagagaatgaactatgcattgcttttgtcacacac--------tacaggtgtgtttgtttctaaggaaagatagtag |
7330584 |
T |
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| Q |
212 |
gtaggnnnnnnngttgagggaaagaaatattttctattgtttggaat |
258 |
Q |
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| T |
7330585 |
gtaggaaaaaaagttgagggaaagaaatattttctattgtttggaat |
7330631 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 6192343 - 6192267
Alignment:
| Q |
184 |
gggtgtgtttgtttataaggaaagatag---gtaggnnnnnnngttgagggaaagaaatattttctattgtttggaa |
257 |
Q |
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| T |
6192343 |
gggtgtgtttgtttctaaggaaagatagtgggtaggaaagaaagttgagggaaagaaatattttctattgtttggaa |
6192267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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