View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_low_3 (Length: 580)
Name: NF19111_low_3
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 9 - 580
Target Start/End: Complemental strand, 28195868 - 28195297
Alignment:
| Q |
9 |
gaagaatattgatcgcaagaaggaaacgataaagaggaagtcgaattcttgtgcaaaaggcgaggttaagggagnnnnnnnnttagaccaacaaaatgaa |
108 |
Q |
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| T |
28195868 |
gaagaaaattgatcgcaagaaggaaacgataaagaggaagtcgaattctagtgcaaaaggcgaggttaagggaaaaaaaaaattagaccaacaaaatgaa |
28195769 |
T |
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| Q |
109 |
atgggtgagggtgatggtgatgttaatgaaaagaagaagaaaaaagcgatcaaatcgaaggatagagctcctagatgttctataaagaaacgcggaaatt |
208 |
Q |
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| T |
28195768 |
atgggtgagggtgatggtgatgttaatgaaaagaagaagaaaaaagctatcaaatcgaaggatagagctcctagatgttctataaagaaacgcggaaatt |
28195669 |
T |
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| Q |
209 |
tagaggatcttagccgtggtggcagtgatgatgtatgtccaattcaagtgtccagtgactatgatatggagttgacagttgaagatttgatggccattgc |
308 |
Q |
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| T |
28195668 |
tagaggatcttagccgtggtggcagtgatgatgtatgtccagttcaattgtccagtgactatgatatggagttgacagttgaagatttgatggccattgc |
28195569 |
T |
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| Q |
309 |
agaacaggtaattttctttttctgattagctgataattcaagcgtccgtggtagcttactttgcttgagtaagctgaatagaaatgtttgtcactagcat |
408 |
Q |
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| T |
28195568 |
agaacaggtaattttctttttctgataagctgataattcaagcgtccgtggtagcttactttgcttgtgtaagctgaatagaaatgtttgtcactagcat |
28195469 |
T |
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| Q |
409 |
ttctttgtatcatcatacattatattatcatatgatctattgaatttaaaatattgcttcccaagacaatggttgatgtgatggagattttaatttctct |
508 |
Q |
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| T |
28195468 |
ttctttgtatcatcatacattatattatcatatgatctattgaatttaaaatattgcttcccaagacaatggttgatgtgatggatattttaatttctct |
28195369 |
T |
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| Q |
509 |
ctataaccgcttgaacaattttgtcgtatgtgtgcagtatgtcaaagattatgaggacaaagaactgcaaga |
580 |
Q |
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| T |
28195368 |
ctataaccgcttgaacaattttgtcgtatgtgtgcagtatgtcaaagattgtgaggacaaagaactgcaaga |
28195297 |
T |
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